Hg_chrom9_TN10mRNA_17742
Organism: Heterodera glycines Gene Locus: chr9:5562664-5563725 Feature type: polypeptideProtein Sequence
Length: 228
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.918 | 1.224 | 0.877 | 0.302 | 1.681 | 0.45 | 0.679 | 1.754 | 0.975 | 1.66 | 1.329 | 1.806 | 1.34 | 0.59 | 0.985 | 0.313 | 1.079 | 0.997 | 0.337 | 0.903 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16770
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.941
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.258
|
0.244
|
0.031
|
0.705
|
0.231
|
0.513
|
0.326
|
0.018
|
0.198
|
0.197
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013057
|
1.000
|
1.000
|
Hsc_gene_8656.t1
|
Hsc_gene_8656.t1
|
— |
D3ZY60.1 Pleckstrin homology domain-containing family A member 8 [Rattus norvegicus]
|
KAF7637379.1 GLTP domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005737|GO:0120009|GO:0120013
|
GO:0008150_0.678|GO:0005575_0.660|GO:0110165_0.651|GO:0003674_0.613|GO:0005488_0.527|GO:0005622_0.527|GO:0005737_0.504
|
IPR014830+10-199_33-183+|IPR036497+12-224_29-224+
|
— |
PF08718+33-183+Glycolipid_transfer_protein_(GLTP)
|
G3DSA:1.10.3520.10:FF:000001+12-225+Pleckstrin_domain-containing_family_A_member_8
|
PTHR10219+10-199+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-22
|
1.000
|
23-228
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.617
|
26026.030
|
6.700
|
1.000
|
32.018
|
11.842
|
47.807
|
52.193
|
17.105
|
14.912
|
42.982
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightgreen
|
464.963
|
190.483
|
433.724
|
504.397
|
601.972
|
631.750
|
635.832
|
598.587
|
353.464
|
420.334
|
391.675
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.958
|
1.268
|
0.326
|
0.223
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.