Hg_chrom9_TN10mRNA_17743
Organism: Heterodera glycines Gene Locus: chr9:5564130-5565932 Feature type: polypeptideProtein Sequence
Length: 250
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.07 | 0.465 | 1.018 | 0.414 | 1.2 | 1.128 | 0.952 | 1.0 | 1.067 | 1.081 | 1.212 | 1.647 | 0.889 | 0.538 | 0.735 | 1.257 | 0.656 | 1.576 | 1.231 | 0.706 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16771
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.823
|
0.252
|
0.008
|
0.495
|
0.092
|
0.035
|
0.030
|
0.006
|
0.047
|
0.023
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013058
|
1.000
|
1.000
|
Hsc_gene_8655.t1
|
— | — |
Q09583.3 Proteasome subunit alpha type-3 [Caenorhabditis elegans]
|
KAF7639949.1 Proteasome subunit alpha type [Meloidogyne graminicola]
|
No
|
-0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005839|GO:0006511|GO:0019773|GO:0051603
|
GO:0005575_0.892|GO:0110165_0.881|GO:0005622_0.787|GO:0005737_0.738|GO:0043226_0.712|GO:0043229_0.686|GO:0016020_0.656|GO:0043227_0.588|GO:0043231_0.568|GO:0032991_0.556|GO:0008150_0.518
|
IPR000426+8-30+|IPR001353+33-216+|IPR023332+23-236+|IPR029055+1-250_6-235+|IPR050115+6-228+
|
SM00948+8-30+
|
PF00227+33-216+Proteasome_subunit|PF10584+8-30+Proteasome_subunit_A_N-terminal_signature
|
— |
PTHR11599+6-228+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-250
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.593
|
27298.240
|
6.347
|
-0.500
|
26.400
|
9.200
|
45.600
|
54.400
|
13.600
|
12.800
|
52.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
turquoise
|
1507.974
|
1743.920
|
1483.648
|
2591.829
|
2722.312
|
2014.713
|
1885.913
|
1344.870
|
377.786
|
1143.845
|
815.534
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.464
|
0.435
|
0.914
|
— |
-0.419
|
— |
-0.686
|
0.630
|
— | — | — | — | — |
No JSON data available for plots.