Hg_chrom9_TN10mRNA_17744
Organism: Heterodera glycines Gene Locus: chr9:5566271-5569868 Feature type: polypeptideProtein Sequence
Length: 528
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.277 | 0.484 | 0.861 | 0.522 | 0.884 | 1.117 | 0.834 | 1.515 | 0.758 | 1.382 | 0.631 | 0.446 | 1.21 | 0.874 | 1.585 | 1.353 | 0.838 | 1.119 | 1.02 | 0.724 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16772
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
RRLLSEAFSVEERQRHK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.724
|
0.373
|
0.060
|
0.286
|
0.043
|
0.082
|
0.108
|
0.117
|
0.024
|
0.248
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013059
|
1.000
|
1.000
|
Hsc_gene_8653.t1
|
Hsc_gene_8654.t1
|
— |
Q9TXV7.1 Probable tyrosyl-DNA phosphodiesterase [Caenorhabditis elegans]
|
KAI1721225.1 tyrosyl-DNA phosphodiesterase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0005634|GO:0006281|GO:0008081
|
GO:0008150_0.835|GO:0005575_0.767|GO:0009987_0.766|GO:0110165_0.765|GO:0003674_0.703|GO:0005622_0.688|GO:0016020_0.685|GO:0043226_0.637|GO:0043229_0.621|GO:0043227_0.598|GO:0003824_0.592|GO:0043231_0.589|GO:0008152_0.582|GO:0044238_0.557|GO:0050896_0.535|GO:0016787_0.517|GO:0043170_0.512|GO:0051716_0.508|GO:0005634_0.503
|
IPR001736+140-172+|IPR010347+39-510_62-499+
|
— |
PF06087+62-499+Tyrosyl-DNA_phosphodiesterase
|
— |
PTHR12415+39-510+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
528-528
|
1.000
|
1-527
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.824
|
57951.800
|
9.253
|
18.000
|
25.000
|
11.174
|
46.023
|
53.977
|
14.962
|
10.038
|
52.841
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
1392.770
|
1470.546
|
679.627
|
583.243
|
655.436
|
637.426
|
1398.014
|
575.128
|
253.374
|
3653.554
|
2196.334
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.345
|
-1.471
|
— |
0.136
|
— |
1.144
|
— |
1.425
|
-3.957
|
— | — | — | — |
No JSON data available for plots.