Hg_chrom9_TN10mRNA_17745
Organism: Heterodera glycines Gene Locus: chr9:5570850-5572410 Feature type: polypeptideProtein Sequence
Length: 269
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.081 | 1.297 | 0.879 | 1.538 | 1.053 | 0.953 | 0.797 | 1.115 | 0.909 | 1.206 | 0.732 | 1.093 | 1.859 | 0.858 | 1.138 | 1.009 | 0.792 | 0.958 | 0.858 | 0.328 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16773
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.763
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.244
|
0.424
|
0.058
|
0.361
|
0.377
|
0.358
|
0.220
|
0.053
|
0.304
|
0.621
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004987
|
2.000
|
1.000
|
Hsc_gene_8652.t1
|
Hsc_gene_8652.t1
|
— |
P34276.1 GILT-like protein C02D5.2 [Caenorhabditis elegans]
|
KAH7726390.1 interferon gamma-inducible thiol reductase [Aphelenchus avenae]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016671
|
GO:0005575_0.881|GO:0110165_0.879|GO:0005622_0.769|GO:0005737_0.750|GO:0008150_0.631|GO:0003674_0.563|GO:0016020_0.532
|
IPR004911+73-265_88-194+
|
— |
PF03227+88-194+Gamma_interferon_inducible_lysosomal_thiol_reductase_(GILT)
|
— |
PTHR13234+73-265+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-269
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.701
|
29708.880
|
6.714
|
1.000
|
23.792
|
11.152
|
44.981
|
55.019
|
12.639
|
11.152
|
53.532
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
705.321
|
529.220
|
514.646
|
737.710
|
774.583
|
1390.704
|
836.300
|
704.021
|
139.036
|
923.806
|
587.476
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.269
|
0.342
|
0.628
|
— |
0.859
|
-0.725
|
-1.087
|
0.390
|
— | — | — | — | — |
No JSON data available for plots.