Hg_chrom9_TN10mRNA_17747
Organism: Heterodera glycines Gene Locus: chr9:5576944-5580289 Feature type: polypeptideProtein Sequence
Length: 270
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.077 | 0.431 | 1.347 | 0.128 | 1.728 | 1.425 | 0.838 | 0.926 | 0.988 | 0.851 | 1.515 | 0.871 | 0.926 | 0.356 | 1.89 | 1.058 | 0.425 | 0.73 | 0.855 | 1.089 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16774
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.970
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKGRKSSK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.809
|
0.113
|
0.002
|
0.345
|
0.020
|
0.075
|
0.138
|
0.013
|
0.050
|
0.089
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013060
|
1.000
|
1.000
|
Hsc_gene_8650.t1
|
Hsc_gene_8650.t1
|
— |
Q91WN1.2 DnaJ homolog subfamily C member 9 [Mus musculus]
|
KAH7726389.1 dnaJ subfamily C member 9-like protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.875|GO:0110165_0.869|GO:0005622_0.844|GO:0016020_0.782|GO:0043226_0.771|GO:0008150_0.759|GO:0043229_0.759|GO:0005737_0.758|GO:0043227_0.703|GO:0043231_0.681|GO:0009987_0.658|GO:0003674_0.603|GO:0005488_0.571
|
IPR001623+14-82_15-79_15-87_15-90_20-38_38-53_62-82_82-101+|IPR036869+6-108_11-91+|IPR052594+1-267+
|
SM00271+14-82+
|
PF00226+15-87+DnaJ_domain
|
— |
PTHR44144+1-267+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
172-270
|
1.000
|
1-171
|
2yua_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.654
|
30987.680
|
9.290
|
6.500
|
38.889
|
10.000
|
56.296
|
43.704
|
21.111
|
17.778
|
42.593
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
1508.401
|
1286.108
|
1234.927
|
1130.720
|
1463.029
|
1448.428
|
854.836
|
980.649
|
2668.431
|
1448.422
|
1971.283
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.290
|
-0.323
|
— |
0.340
|
— |
-0.751
|
-0.667
|
— | — | — | — | — | — |
No JSON data available for plots.