Hg_chrom9_TN10mRNA_17748
Organism: Heterodera glycines Gene Locus: chr9:5580572-5584690 Feature type: polypeptideProtein Sequence
Length: 669
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.13 | 0.765 | 1.087 | 0.412 | 0.747 | 0.728 | 0.89 | 1.57 | 0.963 | 1.555 | 0.498 | 0.879 | 1.619 | 0.949 | 1.617 | 1.089 | 0.637 | 0.997 | 1.84 | 0.615 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16775
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
RRKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.115
|
0.027
|
0.003
|
0.182
|
0.405
|
0.535
|
0.538
|
0.003
|
0.587
|
0.041
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013061
|
1.000
|
1.000
|
Hsc_gene_8648.t1
|
Hsc_gene_8648.t1
|
— |
Q64319.1 Amino acid transporter heavy chain SLC3A1 [Rattus norvegicus]
|
KAH7726386.1 CBN-ATGP-2 protein [Aphelenchus avenae]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005975
|
GO:0008150_0.935|GO:0003674_0.849|GO:0005575_0.738|GO:0110165_0.738|GO:0016020_0.603|GO:0008152_0.602|GO:0044238_0.543|GO:0003824_0.527
|
IPR006047+131-527_146-482+|IPR017853+122-542+|IPR031984+67-127+
|
SM00642+131-527+
|
PF00128+146-482+Alpha_amylase,_catalytic_domain|PF16028+67-127+Solute_carrier_family_3_member_2_N-terminus
|
— |
PTHR10357+114-598+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-669
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.772
|
74662.340
|
8.475
|
15.500
|
24.813
|
13.453
|
42.451
|
57.549
|
14.350
|
10.463
|
50.673
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
darkorange
|
586.517
|
851.797
|
580.472
|
615.471
|
628.387
|
535.573
|
835.113
|
409.658
|
413.356
|
584.819
|
511.334
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.783
|
-0.606
|
0.193
|
— | — |
0.651
|
-0.492
|
1.171
|
— | — | — | — | — |
No JSON data available for plots.