Hg_chrom9_TN10mRNA_17751
Organism: Heterodera glycines Gene Locus: chr9:5596321-5597173 Feature type: polypeptideProtein Sequence
Length: 204
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.912 | 1.368 | 1.426 | 0.169 | 0.817 | 0.503 | 0.817 | 0.245 | 1.307 | 1.259 | 1.263 | 0.288 | 1.089 | 1.131 | 0.9 | 1.401 | 0.804 | 1.114 | 0.754 | 0.721 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16778
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.983
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.286
|
0.120
|
0.011
|
0.676
|
0.335
|
0.380
|
0.328
|
0.051
|
0.163
|
0.065
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013064
|
1.000
|
1.000
|
Hsc_gene_8643.t1
|
Hsc_gene_8643.t1
|
— |
Q3T093.1 Adaptin ear-binding coat-associated protein 1 [Bos taurus]
|
KAH7726379.1 adaptin ear-binding coat-associated protein 1 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006897|GO:0016020
|
GO:0005575_0.909|GO:0110165_0.899|GO:0005622_0.704|GO:0005737_0.660|GO:0008150_0.584|GO:0016020_0.539|GO:0043226_0.519|GO:0009987_0.516|GO:0043229_0.508
|
IPR011993+11-133+|IPR012466+7-162_10-128+
|
— |
PF07933+7-162+Protein_of_unknown_function_(DUF1681)
|
G3DSA:2.30.29.30:FF:000064+11-133+Adaptin_ear-binding_coat-associated_protein_1
|
PTHR12847+4-199+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
162-204
|
1.000
|
1-161
|
6rh6_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.862
|
22203.130
|
6.988
|
0.500
|
25.980
|
7.843
|
48.529
|
51.471
|
13.235
|
12.745
|
56.863
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
681.742
|
885.216
|
529.579
|
536.266
|
618.734
|
682.433
|
1132.857
|
966.155
|
398.082
|
677.347
|
557.662
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.970
|
-0.860
|
— |
0.174
|
— |
0.741
|
0.399
|
0.371
|
— | — | — | — | — |
No JSON data available for plots.