SCN Proteipedia

Hg_chrom9_TN10mRNA_17752

Organism: Heterodera glycines Gene Locus: chr9:5598348-5602374 Feature type: polypeptide

Protein Sequence

Length: 579

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.663	1.888	0.911	0.655	0.576	1.373	0.637	2.073	0.691	1.12	0.654	1.016	0.624	0.897	1.163	1.949	1.048	0.916	1.727	0.762	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16779	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Not_Clustered	0.871

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	nucleus	—	RKPQRK	—	—	—	—	—	—	0.000	—	—	0.832	0.100	0.009	0.459	0.103	0.097	0.102	0.009	0.136	0.011

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0013065	1.000	1.000	Hsc_gene_8642.t1	Hsc_gene_8642.t1;Hsc_gene_8642.t2	—	Q9R1K5.1 Fizzy-related protein homolog [Mus musculus]	KAI1726812.1 WD domain, g-beta repeat domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0010997\|GO:0097027\|GO:1904668	GO:0008150_0.877\|GO:0009987_0.759\|GO:0005575_0.750\|GO:0110165_0.747\|GO:0065007_0.684\|GO:0005622_0.678\|GO:0050789_0.676\|GO:0050794_0.654\|GO:0043226_0.630\|GO:0043229_0.619\|GO:0071840_0.584\|GO:0016043_0.581\|GO:0008152_0.571\|GO:0043170_0.571\|GO:0048518_0.557\|GO:0016020_0.555\|GO:0044238_0.540\|GO:0003674_0.512	IPR001680+258-299_304-344_312-353_347-384_388-427_393-427_395-436_430-472_432-472_437-481_475-515_518-557_520-556_525-558+\|IPR015943+251-562+\|IPR019775+459-473+\|IPR024977+311-369+\|IPR033010+32-565+\|IPR036322+240-558+	SM00320+258-299_304-344_347-384_388-427_430-472_475-515_518-557+	PF00400+393-427_432-472_520-556+WD_domain,_G-beta_repeat\|PF12894+311-369+Anaphase-promoting_complex_subunit_4_WD40_domain	G3DSA:2.130.10.10:FF:000025+258-560+FIZZY-related_2_isoform_1	PTHR19918+32-565+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-202	1.000	203-579	8a3t_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.957	64445.500	8.784	21.000	22.625	11.226	56.131	43.869	14.162	8.463	56.822

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	1876.782	3750.686	2233.314	1618.323	1485.391	1915.988	3616.472	1843.702	1663.778	789.133	1163.981

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.977	-1.350	-0.356	-0.155	0.382	0.927	—	1.113	—	—	—	—	—

No JSON data available for plots.

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