Hg_chrom9_TN10mRNA_17755
Organism: Heterodera glycines Gene Locus: chr9:5608507-5614878 Feature type: polypeptideProtein Sequence
Length: 768
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.924 | 0.848 | 0.781 | 0.135 | 1.15 | 0.935 | 0.636 | 0.651 | 1.215 | 1.584 | 0.986 | 1.149 | 1.23 | 1.327 | 1.648 | 1.339 | 0.619 | 0.829 | 0.701 | 0.574 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16781
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
KKRK,LKRKEIRR,KKRAQIRESRRKTERRQKR,KRAQIRESRRKTERRQKRL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.269
|
0.206
|
0.156
|
0.072
|
0.135
|
0.066
|
0.235
|
0.290
|
0.286
|
0.922
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002567
|
1.000
|
3.000
|
Hsc_gene_8641.t1;Hsc_gene_8641.t2;Hsc_gene_8641.t3
|
Hsc_gene_8641.t1;Hsc_gene_8641.t2;Hsc_gene_8641.t3
|
— | — |
KAI1732619.1 moulting cycle domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.954|GO:0005575_0.947|GO:0110165_0.947|GO:0032501_0.801|GO:0032502_0.780|GO:0048856_0.780|GO:0007275_0.752|GO:0009888_0.693|GO:0008544_0.670|GO:0018996_0.670|GO:0040002_0.670|GO:0042303_0.670|GO:0042335_0.670|GO:0042338_0.670|GO:0005576_0.554|GO:0005615_0.554
|
IPR006954+229-581+
|
— |
PF04870+229-581+Moulting_cycle
|
— |
PTHR21523+68-764+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-47;157-203;241-335
|
3.000
|
48-156;204-240;336-768
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.897
|
86062.220
|
10.315
|
31.000
|
27.083
|
8.594
|
47.526
|
52.474
|
15.885
|
11.198
|
47.135
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
blue
|
717.248
|
17.488
|
37.612
|
15.766
|
18.915
|
97.007
|
87.828
|
43.667
|
13.253
|
3008.664
|
1724.917
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.874
|
— |
-1.143
|
— |
2.376
|
— |
-1.267
|
1.156
|
-7.954
|
— |
-6.926
|
— | — |
No JSON data available for plots.