Hg_chrom9_TN10mRNA_17757
Organism: Heterodera glycines Gene Locus: chr9:5616775-5627650 Feature type: polypeptideProtein Sequence
Length: 1,251
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.892 | 0.799 | 0.669 | 0.717 | 1.159 | 1.189 | 0.638 | 1.399 | 1.066 | 1.123 | 1.054 | 0.94 | 1.621 | 0.892 | 1.403 | 1.45 | 0.747 | 1.078 | 0.615 | 0.517 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16783
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.950
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KRRRR,KLGRRR,KRHRRRRFR,KRQTGKFKKKSKRICR,KRSGETDNGKKQRKDEK,RRFPDSLLGNPEKRKEL,KKRMDQLELELKTKKARV
|
36-58
|
0.972
|
31-51
|
0.995
|
— | — |
0.000
|
— | — |
0.149
|
0.128
|
0.030
|
0.167
|
0.260
|
0.188
|
0.193
|
0.014
|
0.646
|
0.077
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002278
|
2.000
|
2.000
|
Hsc_gene_8640.t1;Hsc_gene_8640.t2
|
Hsc_gene_8639.t1;Hsc_gene_8640.t2
|
— |
Q8I4B0.1 Potassium voltage-gated channel protein shk-1 [Caenorhabditis elegans]
|
KAH7726415.1 Protein SHK-1 f [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005216|GO:0005249|GO:0005515|GO:0006302|GO:0006811|GO:0006813|GO:0008076|GO:0016020|GO:0016887|GO:0051260|GO:0055085
|
GO:0008150_0.929|GO:0009987_0.911|GO:0051179_0.900|GO:0006810_0.897|GO:0051234_0.897|GO:0005575_0.847|GO:0110165_0.847|GO:0055085_0.842|GO:0003674_0.839|GO:0016020_0.834|GO:0071944_0.821|GO:0005886_0.819|GO:0005215_0.810|GO:0005216_0.810|GO:0006811_0.810|GO:0015075_0.810|GO:0015267_0.810|GO:0022803_0.810|GO:0022857_0.810|GO:0034220_0.810|GO:0098660_0.769|GO:0022836_0.765|GO:0005261_0.753|GO:0006812_0.753|GO:0008324_0.753|GO:0098655_0.753|GO:0030001_0.747|GO:0015318_0.712|GO:0098662_0.712|GO:0022890_0.695|GO:0046873_0.695|GO:0005244_0.666|GO:0022832_0.666|GO:0006813_0.664|GO:0071805_0.660|GO:0022843_0.652|GO:0015079_0.629|GO:0005267_0.625|GO:0005249_0.622|GO:0065007_0.525|GO:0030054_0.511
|
IPR000210+803-903+|IPR003131+805-892+|IPR003968+845-855_1073-1081_1097-1111_1168-1179+|IPR005821+933-1189+|IPR011333+780-905_804-899+|IPR027359+906-1080+|IPR027417+47-245_48-322+|IPR038729+50-254+
|
SM00225+803-903+
|
PF00520+933-1189+Ion_transport_protein|PF02214+805-892+BTB/POZ_domain|PF13476+50-254+AAA_domain
|
G3DSA:1.10.287.70:FF:000002+1081-1191+Potassium_voltage-gated_channel_subfamily_a_member|G3DSA:1.20.120.350:FF:000074+905-1080+SHaW_family_of_potassium_channels
|
PTHR11537+804-1199+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-40;519-801
|
2.000
|
41-518;802-1251
|
9nei_G
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.872
|
140249.430
|
9.762
|
57.500
|
27.258
|
11.191
|
50.040
|
49.960
|
16.627
|
10.631
|
48.681
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
850.300
|
1275.747
|
1465.641
|
1054.411
|
581.556
|
463.727
|
585.165
|
1714.508
|
445.585
|
708.090
|
595.587
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.412
|
-0.366
|
-0.890
|
-0.313
|
0.345
|
1.787
|
-1.411
|
— | — | — | — | — |
No JSON data available for plots.