Hg_chrom9_TN10mRNA_17760
Organism: Heterodera glycines Gene Locus: chr9:5643017-5647738 Feature type: polypeptideProtein Sequence
Length: 643
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.977 | 0.977 | 1.272 | 0.483 | 1.011 | 1.356 | 0.537 | 0.933 | 1.175 | 1.597 | 0.825 | 1.464 | 0.994 | 0.808 | 1.206 | 0.889 | 0.943 | 1.155 | 0.479 | 0.686 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16786
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.595
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.254
|
0.175
|
0.060
|
0.536
|
0.220
|
0.680
|
0.502
|
0.013
|
0.163
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013066
|
1.000
|
1.000
|
Hsc_gene_8628.t1
|
Hsc_gene_8628.t1
|
— |
Q8WVM8.4 Sec1 family domain-containing protein 1 [Homo sapiens]
|
KAI1726803.1 sec1 family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016192
|
GO:0005575_0.837|GO:0110165_0.829|GO:0008150_0.743|GO:0005622_0.738|GO:0016020_0.692|GO:0005737_0.687|GO:0043226_0.615|GO:0009987_0.600|GO:0043229_0.599|GO:0043227_0.569|GO:0043231_0.546|GO:0003674_0.541
|
IPR001619+11-631_14-643_42-632+|IPR027482+154-636+|IPR036045+12-639+|IPR043127+273-521+|IPR043154+11-143+
|
— |
PF00995+42-632+Sec1_family
|
— |
PTHR11679+11-631+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-643
|
1y9j_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.534
|
71985.510
|
5.843
|
-5.000
|
26.283
|
8.398
|
47.745
|
52.255
|
13.219
|
13.064
|
49.300
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
orange
|
925.127
|
1290.856
|
794.428
|
973.846
|
1201.544
|
1228.791
|
1357.026
|
940.460
|
1018.312
|
363.589
|
644.184
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.929
|
-0.544
|
0.402
|
0.272
|
— | — |
-0.490
|
0.672
|
— | — | — | — | — |
No JSON data available for plots.