Hg_chrom9_TN10mRNA_17761
Organism: Heterodera glycines Gene Locus: chr9:5648187-5650567 Feature type: polypeptideProtein Sequence
Length: 317
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.137 | 1.1 | 0.574 | 0.435 | 0.946 | 0.971 | 0.526 | 0.158 | 1.262 | 1.364 | 1.052 | 1.856 | 1.49 | 0.607 | 0.901 | 1.037 | 0.983 | 1.434 | 0.728 | 1.299 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16787
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.766
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— |
RALKK
|
— | — | — | — | — | — |
0.004
|
— | — |
0.060
|
0.384
|
0.040
|
0.185
|
0.742
|
0.169
|
0.176
|
0.024
|
0.216
|
0.183
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013067
|
1.000
|
1.000
|
Hsc_gene_8629.t1
|
Hsc_gene_8629.t1
|
— |
Q09517.2 Very-long-chain 3-oxooacyl-coA reductase let-767 [Caenorhabditis elegans]
|
ABC59299.1 17beta-hydroxysteroid dehydrogenase, partial [Heterodera glycines]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0005575_0.794|GO:0110165_0.783|GO:0008150_0.748|GO:0003674_0.671|GO:0016020_0.665|GO:0005622_0.658|GO:0005737_0.645|GO:0009987_0.607|GO:0043226_0.599|GO:0043229_0.582|GO:0043227_0.552|GO:0043231_0.542|GO:0071944_0.539|GO:0008152_0.532|GO:0003824_0.522
|
IPR002347+47-64_47-240_124-135_175-191_201-220_222-239+|IPR020904+188-216+|IPR036291+47-260+
|
— |
PF00106+47-240+short_chain_dehydrogenase
|
G3DSA:3.40.50.720:FF:000137+42-269+Hydroxysteroid_(17-beta)_dehydrogenase_3
|
PTHR43086+4-311+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
309-317
|
1.000
|
1-308
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.762
|
35484.370
|
9.437
|
8.500
|
20.505
|
11.041
|
42.271
|
57.729
|
11.672
|
8.833
|
49.211
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
4424.423
|
466.428
|
755.320
|
3933.457
|
11510.811
|
6631.021
|
9198.225
|
1120.825
|
587.750
|
6310.006
|
3857.611
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.466
|
2.939
|
2.489
|
1.517
|
-0.782
|
0.483
|
-2.674
|
3.181
|
-3.548
|
2.880
|
— | — | — |
No JSON data available for plots.