Hg_chrom9_TN10mRNA_17762
Organism: Heterodera glycines Gene Locus: chr9:5652016-5653526 Feature type: polypeptideProtein Sequence
Length: 187
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.435 | 0.373 | 0.972 | 0.369 | 0.713 | 0.686 | 0.509 | 0.267 | 2.139 | 1.156 | 0.648 | 2.517 | 2.822 | 1.337 | 1.31 | 0.458 | 1.403 | 0.891 | 1.645 | 1.887 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16788
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.888
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum|golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.101
|
0.151
|
0.004
|
0.091
|
0.779
|
0.406
|
0.784
|
0.010
|
0.409
|
0.034
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013068
|
1.000
|
1.000
|
Hsc_gene_8630.t1
|
Hsc_gene_8630.t1
|
— |
P52879.1 Protein RER1 homolog [Caenorhabditis elegans]
|
KAI6206456.1 Protein RER1 [Aphelenchoides besseyi];KAI6223271.1 Protein RER1 [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0008150_0.940|GO:0005575_0.907|GO:0110165_0.907|GO:0009987_0.890|GO:0016020_0.879|GO:0071944_0.872|GO:0005886_0.870|GO:0051179_0.824|GO:0005622_0.798|GO:0005737_0.798|GO:0043226_0.745|GO:0043227_0.730|GO:0043229_0.729|GO:0043231_0.724|GO:0006810_0.694|GO:0051234_0.694|GO:0005773_0.639|GO:0012505_0.612
|
IPR004932+1-187_7-183_19-178+
|
— |
PF03248+19-178+Rer1_family
|
— |
PTHR10743+7-183+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
185-187
|
1.000
|
1-184
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.546
|
22271.230
|
8.386
|
2.500
|
20.856
|
19.251
|
36.898
|
63.102
|
11.230
|
9.626
|
40.642
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
2080.389
|
487.367
|
1597.185
|
1517.756
|
1777.328
|
1726.052
|
1873.175
|
1412.632
|
3425.805
|
2635.538
|
2974.224
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.483
|
1.502
|
— |
0.195
|
— | — |
-0.394
|
0.549
|
— | — | — | — | — |
No JSON data available for plots.