Hg_chrom9_TN10mRNA_17764
Organism: Heterodera glycines Gene Locus: chr9:5679699-5682843 Feature type: polypeptideProtein Sequence
Length: 151
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.539 | 1.078 | 0.722 | 0.685 | 0.883 | 0.679 | 0.71 | 1.325 | 1.766 | 1.432 | 0.903 | 2.727 | 2.024 | 0.891 | 0.541 | 1.135 | 1.086 | 1.104 | 0.0 | 0.779 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16790
|
— | — |
1.778
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.977
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.693
|
0.247
|
0.007
|
0.544
|
0.192
|
0.195
|
0.287
|
0.247
|
0.121
|
0.206
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000941
|
3.000
|
3.000
|
Hsc_gene_8631.t1;Hsc_gene_8631.t2;Hsc_gene_8631.t3
|
Hsc_gene_8631.t1;Hsc_gene_8631.t2;Hsc_gene_8631.t3
|
— |
G5EEV2.1 Transcription-associated protein 1 [Caenorhabditis elegans]
|
KAI1728437.1 FAT domain-containing protein [Ditylenchus destructor]
|
No
|
0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.919|GO:0005575_0.900|GO:0110165_0.895|GO:0016020_0.824|GO:0005622_0.822|GO:0043226_0.777|GO:0043229_0.762|GO:0043227_0.760|GO:0043231_0.751|GO:0009987_0.640|GO:0065007_0.613|GO:0003674_0.608|GO:0050789_0.596|GO:0005634_0.587|GO:0043228_0.574|GO:0043232_0.574|GO:0050896_0.574|GO:0005694_0.545|GO:0051716_0.544|GO:0048518_0.534|GO:0006950_0.509
|
IPR046807+5-148+
|
— |
PF20175+5-148+Tra1_HEAT_repeat_central_region
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-151
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.686
|
16884.760
|
6.852
|
1.000
|
20.530
|
12.583
|
42.384
|
57.616
|
11.258
|
9.272
|
47.682
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
blue
|
107.599
|
11.128
|
17.709
|
30.942
|
50.710
|
25.414
|
38.417
|
17.623
|
6.953
|
393.551
|
227.866
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.336
|
0.912
|
0.682
|
-0.983
|
0.606
|
— |
1.268
|
— | — | — | — | — |
No JSON data available for plots.