Hg_chrom9_TN10mRNA_17765
Organism: Heterodera glycines Gene Locus: chr9:5688010-5691856 Feature type: polypeptideProtein Sequence
Length: 444
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.943 | 0.786 | 0.328 | 0.854 | 0.413 | 0.635 | 0.992 | 1.014 | 2.202 | 1.735 | 0.341 | 2.12 | 2.252 | 0.65 | 0.873 | 0.997 | 1.255 | 0.887 | 1.04 | 0.795 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16791
|
— | — |
1.667
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
11-34
|
1.000
|
— | — | — | — |
0.000
|
— | — |
0.098
|
0.156
|
0.023
|
0.123
|
0.259
|
0.249
|
0.296
|
0.060
|
0.619
|
0.103
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000358
|
4.000
|
4.000
|
Hsc_gene_15692.t1;Hsc_gene_8634.t1;Hsc_gene_8634.t2;Hsc_gene_8634.t3
|
Hsc_gene_14811.t1;Hsc_gene_8634.t1;Hsc_gene_8634.t2;Hsc_gene_8634.t3;Hsc_gene_8636.t1
|
— |
Q03567.2 Uncharacterized transporter slc-17.2 [Caenorhabditis elegans]
|
KAH7722014.1 Protein T19D12.9 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0022857|GO:0055085
|
GO:0008150_0.941|GO:0009987_0.893|GO:0003674_0.852|GO:0006810_0.836|GO:0051179_0.836|GO:0051234_0.836|GO:0055085_0.824|GO:0005215_0.785|GO:0022857_0.785|GO:0005575_0.783|GO:0110165_0.780|GO:0016020_0.753|GO:0071944_0.651|GO:0005886_0.638|GO:0015711_0.567
|
IPR011701+45-369+|IPR020846+20-444+|IPR036259+10-227_11-439_248-444+
|
— |
PF07690+45-369+Major_Facilitator_Superfamily
|
— |
PTHR45757+13-437+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-444
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.815
|
48840.970
|
8.951
|
14.500
|
12.838
|
14.189
|
33.333
|
66.667
|
8.559
|
4.279
|
47.973
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
blue
|
273.827
|
5.740
|
10.128
|
40.201
|
69.564
|
36.160
|
150.798
|
15.439
|
6.790
|
1069.887
|
614.274
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.671
|
2.087
|
0.762
|
-0.933
|
2.068
|
-1.324
|
3.426
|
-7.453
|
2.807
|
-3.590
|
— | — |
No JSON data available for plots.