Hg_chrom9_TN10mRNA_17769
Organism: Heterodera glycines Gene Locus: chr9:5720924-5725856 Feature type: polypeptideProtein Sequence
Length: 575
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.011 | 1.132 | 0.727 | 1.319 | 1.362 | 0.803 | 0.725 | 1.478 | 0.696 | 1.011 | 0.738 | 1.637 | 1.353 | 0.803 | 1.491 | 1.59 | 0.77 | 0.791 | 0.401 | 0.614 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16795
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
0.969
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
KKGPLQSEREIRRSPR
|
— | — | — | — | — |
0.719
|
0.499
|
0.000
|
— |
0.230
|
0.181
|
0.032
|
0.210
|
0.031
|
0.034
|
0.083
|
0.136
|
0.269
|
0.916
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004989
|
1.000
|
2.000
|
Hsc_gene_8624.t1;Hsc_gene_8624.t2
|
Hsc_gene_25767.t1
|
— | — |
KAI1728451.1 PAN domain-containing protein [Ditylenchus destructor]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR003609+58-134_62-131_62-139_358-451_363-450_464-550_466-551_491-551+
|
SM00473+58-134_363-450_464-550+
|
PF00024+62-131_491-551+PAN_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
147-382;574-575
|
2.000
|
1-146;383-573
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.812
|
63781.820
|
7.380
|
8.500
|
27.304
|
10.435
|
51.130
|
48.870
|
15.130
|
12.174
|
52.696
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
blue
|
240.975
|
94.716
|
35.703
|
31.160
|
39.516
|
252.870
|
86.471
|
121.937
|
12.978
|
796.143
|
460.501
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.639
|
-1.742
|
— | — |
2.694
|
-1.540
|
-1.171
|
— |
-6.063
|
— |
-4.116
|
— | — |