SCN Proteipedia

Hg_chrom9_TN10mRNA_17771

Organism: Heterodera glycines Gene Locus: chr9:5734930-5736077 Feature type: polypeptide

Protein Sequence

Length: 179

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.234	1.819	0.609	0.771	1.676	1.576	0.732	0.838	0.745	1.434	1.608	2.958	1.241	0.752	0.456	0.638	0.458	0.423	0.0	0.493	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16797	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	27-ppJ2_pJ2_J3_J4_Female_Male	0.991

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.681	0.270	0.056	0.703	0.072	0.067	0.143	0.141	0.145	0.090

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0013070	1.000	1.000	Hsc_gene_8619.t1	Hsc_gene_8619.t1	—	Q66H45.1 Tetratricopeptide repeat protein 36 [Rattus norvegicus]	KAF7639281.1 TPR_REGION domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.928\|GO:0009987_0.879\|GO:0032501_0.753\|GO:0032502_0.752\|GO:0048856_0.752\|GO:0007275_0.727\|GO:0048731_0.719\|GO:0005575_0.644\|GO:0110165_0.637\|GO:0005622_0.602\|GO:0016020_0.552\|GO:0043226_0.549\|GO:0043227_0.504\|GO:0065007_0.503\|GO:0050789_0.488\|GO:0050794_0.475\|GO:0008152_0.447\|GO:0050896_0.445\|GO:0044237_0.437\|GO:0044238_0.429\|GO:0043170_0.426\|GO:0019222_0.416\|GO:0031323_0.414\|GO:0071944_0.414\|GO:0080090_0.410\|GO:0051179_0.407\|GO:0060255_0.407\|GO:0048519_0.402\|GO:0071840_0.402\|GO:0032991_0.401\|GO:0005886_0.399\|GO:0051234_0.399\|GO:0016043_0.398\|GO:0030154_0.393\|GO:0048869_0.393\|GO:0048523_0.391\|GO:0006810_0.390\|GO:0019538_0.384\|GO:0048468_0.382\|GO:0051641_0.373\|GO:0009628_0.372\|GO:0009892_0.370\|GO:0009056_0.369\|GO:0007399_0.368\|GO:0006996_0.365\|GO:0010605_0.365\|GO:0031324_0.365\|GO:0022008_0.362\|GO:0044281_0.362\|GO:0051246_0.362\|GO:0006793_0.360\|GO:0006796_0.360\|GO:0009057_0.359\|GO:0043412_0.359\|GO:0051649_0.359\|GO:0036211_0.358\|GO:0048699_0.358\|GO:0030182_0.357\|GO:0044085_0.357\|GO:0003008_0.356\|GO:0033036_0.355\|GO:0009894_0.354\|GO:0048666_0.354\|GO:0070727_0.354\|GO:0009314_0.353\|GO:0009416_0.353\|GO:0048513_0.353\|GO:0006508_0.352\|GO:0008104_0.352\|GO:0030163_0.352\|GO:0006082_0.351\|GO:0019752_0.351\|GO:0043436_0.351\|GO:0051248_0.351	IPR011990+43-168_46-174+\|IPR019734+46-79_80-113_118-151+\|IPR038906+3-176+	SM00028+46-79_80-113_118-151+	—	—	PTHR21405+3-176+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-60	1.000	61-179	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.664	19955.910	6.706	0.500	27.933	7.821	49.162	50.838	14.525	13.408	44.134

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	lightyellow	yellowgreen	355.537	199.120	275.524	389.470	339.249	331.576	413.813	581.512	411.480	298.014	346.642

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.240	0.831	0.607	-0.230	—	0.330	0.700	—	—	—	—	—	—

No JSON data available for plots.

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