Hg_chrom9_TN10mRNA_17773
Organism: Heterodera glycines Gene Locus: chr9:5737523-5739895 Feature type: polypeptideProtein Sequence
Length: 216
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.13 | 0.754 | 1.094 | 0.479 | 0.694 | 0.95 | 0.937 | 1.157 | 1.852 | 0.876 | 0.351 | 2.723 | 0.9 | 0.712 | 1.417 | 1.124 | 1.29 | 1.052 | 0.356 | 0.817 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16799
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.056
|
0.868
|
0.006
|
0.079
|
0.019
|
0.035
|
0.016
|
0.032
|
0.017
|
0.045
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013071
|
1.000
|
1.000
|
Hsc_gene_8618.t1
|
Hsc_gene_8618.t1
|
— |
A8WPG6.2 ATP-dependent Clp protease proteolytic subunit 1, mitochondrial [Caenorhabditis briggsae]
|
KAH7729812.1 CBN-CLPP-1 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004176|GO:0004252|GO:0006508
|
GO:0005575_0.724|GO:0110165_0.713|GO:0016020_0.633|GO:0005622_0.613|GO:0005737_0.588|GO:0008150_0.584|GO:0043226_0.508
|
IPR001907+20-210_36-51_36-206_76-96_107-124_128-147_185-204+|IPR018215+107-118+|IPR023562+17-207_30-208+|IPR029045+29-209+|IPR033135+129-142+
|
— |
PF00574+30-208+Clp_protease
|
G3DSA:3.90.226.10:FF:000001+19-211+ATP-dependent_Clp_protease_proteolytic_subunit
|
PTHR10381+17-207+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
207-216
|
1.000
|
1-206
|
9pb1_N
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.652
|
23532.890
|
6.636
|
0.500
|
21.759
|
8.796
|
44.444
|
55.556
|
11.574
|
10.185
|
54.630
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
steelblue
|
1277.145
|
1058.969
|
1037.779
|
1476.585
|
1611.266
|
1227.153
|
1576.689
|
867.672
|
1212.219
|
1357.301
|
1295.123
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.259
|
0.343
|
0.618
|
0.094
|
-0.378
|
0.372
|
-0.606
|
1.005
|
— | — | — | — | — |
No JSON data available for plots.