Hg_chrom9_TN10mRNA_17778
Organism: Heterodera glycines Gene Locus: chr9:5761112-5773749 Feature type: polypeptideProtein Sequence
Length: 719
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.003 | 1.326 | 0.582 | 1.199 | 0.464 | 1.426 | 0.679 | 2.643 | 0.525 | 1.184 | 0.738 | 0.818 | 1.004 | 1.658 | 1.022 | 1.669 | 0.935 | 0.569 | 0.642 | 0.9 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16804
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — |
38-58
|
0.960
|
28-50
|
1.000
|
— | — |
0.000
|
— | — |
0.386
|
0.119
|
0.018
|
0.684
|
0.089
|
0.109
|
0.109
|
0.070
|
0.379
|
0.084
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001469
|
1.000
|
4.000
|
Hsc_gene_8610.t1;Hsc_gene_8610.t2;Hsc_gene_8610.t3;Hsc_gene_8610.t4
|
Hsc_gene_8610.t2
|
— |
Q9U3F4.1 Zyxin [Caenorhabditis elegans]
|
KAI1726797.1 LIM domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.880|GO:0005575_0.792|GO:0110165_0.789|GO:0009987_0.778|GO:0050789_0.753|GO:0065007_0.753|GO:0050794_0.747|GO:0005622_0.708|GO:0003674_0.667|GO:0005488_0.636|GO:0043226_0.575|GO:0043229_0.567|GO:0005515_0.565|GO:0050896_0.552|GO:0016020_0.523|GO:0005737_0.502
|
IPR001781+527-586_528-581_529-584_587-647_588-640_589-645_648-710_648-717_649-713+
|
SM00132+528-581_588-640_648-710+
|
PF00412+529-584_589-645_649-713+LIM_domain
|
G3DSA:2.10.110.10:FF:000057+643-717+Zyxin
|
PTHR24207+266-718+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
185-516
|
2.000
|
1-184;517-719
|
2dlo_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.965
|
78751.650
|
9.389
|
47.000
|
21.140
|
12.796
|
49.791
|
50.209
|
15.160
|
5.981
|
56.467
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
3976.438
|
4770.736
|
8747.493
|
2487.548
|
1104.804
|
5230.012
|
883.585
|
17913.553
|
543.494
|
1562.646
|
1125.867
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.647
|
-1.077
|
-1.707
|
-1.203
|
2.257
|
-2.556
|
1.671
|
-4.199
|
— | — | — | — | — |
No JSON data available for plots.