Hg_chrom9_TN10mRNA_17780
Organism: Heterodera glycines Gene Locus: chr9:5778364-5784915 Feature type: polypeptideProtein Sequence
Length: 801
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.944 | 1.045 | 0.136 | 1.248 | 0.083 | 2.177 | 1.813 | 0.187 | 0.971 | 1.046 | 0.038 | 0.881 | 0.763 | 1.513 | 0.28 | 1.694 | 2.067 | 0.757 | 0.768 | 0.624 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16806
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — | — | — |
63-99
|
0.948
|
— | — |
0.297
|
— | — |
0.144
|
0.160
|
0.028
|
0.160
|
0.080
|
0.046
|
0.066
|
0.031
|
0.199
|
0.946
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004990
|
1.000
|
2.000
|
Hsc_gene_8609.t1;Hsc_gene_8609.t2
|
Hsc_gene_8609.t1;Hsc_gene_8609.t2
|
— | — |
KAI1726858.1 sushi repeat (SCR repeat) domain-containing protein [Ditylenchus destructor]
|
No
|
-0.440
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR000436+46-114_48-112_48-113_74-112_152-221_281-339_284-337_363-421_597-654_603-642_603-649_721-786+|IPR035976+74-118_602-654+|IPR050350+377-776+
|
SM00032+48-112_152-221_284-337_363-421_597-654_721-786+
|
PF00084+74-112_603-649+Sushi_repeat_(SCR_repeat)
|
— |
PTHR19325+377-776+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
657-706
|
2.000
|
1-656;707-801
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.979
|
79623.000
|
7.514
|
4.500
|
3.246
|
6.242
|
40.699
|
59.301
|
1.998
|
1.248
|
69.538
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
540.577
|
325.194
|
773.226
|
231.439
|
86.447
|
95.794
|
105.229
|
439.720
|
33.745
|
1568.320
|
910.645
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.021
|
-0.628
|
-1.632
|
-1.452
|
— | — |
2.095
|
-1.920
|
-3.875
|
— | — | — | — |
No JSON data available for plots.