Hg_chrom9_TN10mRNA_17782
Organism: Heterodera glycines Gene Locus: chr9:5800716-5810141 Feature type: polypeptideProtein Sequence
Length: 1,336
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.931 | 0.975 | 1.034 | 0.929 | 0.898 | 1.631 | 0.615 | 1.647 | 0.715 | 1.649 | 0.544 | 1.585 | 1.268 | 0.691 | 1.039 | 1.337 | 0.933 | 0.964 | 0.864 | 0.506 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16808
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.661
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — |
11-34
|
0.995
|
— | — |
0.000
|
— | — |
0.407
|
0.150
|
0.018
|
0.513
|
0.308
|
0.344
|
0.267
|
0.071
|
0.211
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013075
|
1.000
|
1.000
|
Hsc_gene_8605.t1
|
Hsc_gene_8605.t1
|
— |
Q9XW10.2 Protein pad-1 [Caenorhabditis elegans]
|
KAI1726856.1 protein pad-1 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006895
|
GO:0008150_0.834|GO:0005575_0.806|GO:0110165_0.805|GO:0005622_0.696|GO:0032502_0.670|GO:0048856_0.670|GO:0016020_0.616|GO:0071944_0.616|GO:0005737_0.609|GO:0005886_0.593|GO:0032501_0.564|GO:0009987_0.532|GO:0043226_0.527|GO:0007275_0.511
|
IPR007249+29-338+|IPR040314+23-1089+
|
— |
PF04118+29-338+Dopey,_N-terminal
|
— |
PTHR14042+23-1089+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;1131-1336
|
1.000
|
2-1130
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.530
|
148618.740
|
6.120
|
-10.000
|
23.054
|
10.704
|
48.653
|
51.347
|
11.976
|
11.078
|
50.749
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
996.440
|
1499.365
|
1179.875
|
784.912
|
839.072
|
1200.045
|
1320.978
|
913.755
|
929.993
|
760.179
|
832.956
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.574
|
-1.071
|
-0.480
|
— |
0.530
|
— |
-0.496
|
0.672
|
— | — | — | — | — |
No JSON data available for plots.