Hg_chrom9_TN10mRNA_17783
Organism: Heterodera glycines Gene Locus: chr9:5810202-5815557 Feature type: polypeptideProtein Sequence
Length: 946
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.094 | 0.959 | 0.653 | 0.583 | 0.828 | 1.111 | 0.818 | 0.687 | 0.963 | 1.5 | 0.657 | 1.679 | 1.028 | 0.529 | 0.992 | 2.008 | 1.23 | 0.817 | 0.976 | 0.435 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16809
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.670
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
RKKK,PVAKRHK
|
— | — |
38-75
|
0.957
|
— | — |
0.059
|
— | — |
0.379
|
0.149
|
0.039
|
0.515
|
0.247
|
0.445
|
0.378
|
0.086
|
0.210
|
0.067
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013076
|
2.000
|
0.000
|
0.000
|
Hsc_gene_8605.t1
|
— |
Q9XW10.2 Protein pad-1 [Caenorhabditis elegans]
|
KAI1726856.1 protein pad-1 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006895
|
GO:0005575_0.947|GO:0110165_0.946|GO:0005622_0.854|GO:0008150_0.822|GO:0016020_0.769|GO:0005737_0.748|GO:0043226_0.710|GO:0071944_0.707|GO:0043229_0.693|GO:0005886_0.690|GO:0032501_0.668|GO:0032502_0.654|GO:0048856_0.654|GO:0043227_0.648|GO:0007275_0.622|GO:0043231_0.620|GO:0003008_0.561|GO:0009790_0.552|GO:0050877_0.545|GO:0007389_0.540|GO:0050890_0.540|GO:0009880_0.534|GO:0005773_0.522|GO:0012505_0.511
|
IPR040314+50-945+
|
— | — | — |
PTHR14042+50-945+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
416-498;866-946
|
2.000
|
1-415;499-865
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.874
|
101684.400
|
8.180
|
12.500
|
19.133
|
7.822
|
49.154
|
50.846
|
10.571
|
8.562
|
55.391
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
lightcyan
|
1678.259
|
1983.220
|
1664.590
|
1391.855
|
1627.890
|
2137.776
|
2085.829
|
2831.437
|
926.295
|
1501.690
|
1255.092
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.481
|
-0.648
|
-0.150
|
0.194
|
0.408
|
— |
0.303
|
-0.299
|
— | — | — | — | — |
No JSON data available for plots.