Hg_chrom9_TN10mRNA_17787
Organism: Heterodera glycines Gene Locus: chr9:5863201-5866939 Feature type: polypeptideProtein Sequence
Length: 459
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.811 | 1.013 | 0.871 | 0.676 | 0.726 | 1.732 | 0.519 | 0.98 | 1.065 | 1.531 | 0.759 | 1.922 | 1.21 | 0.587 | 0.934 | 1.65 | 1.179 | 0.858 | 1.006 | 0.705 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16813
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.933
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.325
|
0.142
|
0.023
|
0.441
|
0.195
|
0.387
|
0.330
|
0.046
|
0.192
|
0.084
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013076
|
2.000
|
0.000
|
0.000
|
Hsc_gene_8605.t1
|
— |
Q9XW10.2 Protein pad-1 [Caenorhabditis elegans]
|
KAI1726856.1 protein pad-1 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006895
|
GO:0005575_0.926|GO:0110165_0.926|GO:0005622_0.847|GO:0008150_0.810|GO:0005737_0.765|GO:0016020_0.743|GO:0043226_0.685|GO:0071944_0.684|GO:0005886_0.665|GO:0043229_0.665|GO:0032501_0.652|GO:0043227_0.645|GO:0032502_0.638|GO:0048856_0.638|GO:0043231_0.613|GO:0007275_0.601|GO:0003008_0.556|GO:0005773_0.548|GO:0009790_0.538|GO:0050877_0.537|GO:0012505_0.536|GO:0007389_0.531|GO:0050890_0.531|GO:0009880_0.525
|
IPR040314+70-444+
|
— | — | — |
PTHR14042+70-444+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;453-459
|
1.000
|
2-452
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.755
|
51278.550
|
7.843
|
6.500
|
20.697
|
10.022
|
50.545
|
49.455
|
11.547
|
9.150
|
49.891
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
747.342
|
370.254
|
321.228
|
213.990
|
215.117
|
188.094
|
242.099
|
270.150
|
121.334
|
2495.774
|
1478.157
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.434
|
-0.928
|
-0.478
|
— | — |
0.374
|
0.416
|
— |
-4.487
|
— |
-3.059
|
— | — |
No JSON data available for plots.