Hg_chrom9_TN10mRNA_17789
Organism: Heterodera glycines Gene Locus: chr9:5868879-5871293 Feature type: polypeptideProtein Sequence
Length: 291
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.478 | 1.199 | 0.937 | 0.0 | 0.974 | 1.234 | 0.941 | 2.577 | 0.687 | 0.557 | 1.302 | 2.224 | 0.573 | 0.661 | 1.403 | 1.522 | 1.07 | 0.417 | 0.264 | 0.303 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16815
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KPAKKRETKG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.906
|
0.081
|
0.052
|
0.176
|
0.030
|
0.064
|
0.051
|
0.005
|
0.100
|
0.112
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013079
|
1.000
|
1.000
|
Hsc_gene_8601.t1
|
— | — | — |
KHN74933.1 Zinc finger protein sdc-1 [Toxocara canis]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046982
|
GO:0005575_0.766|GO:0110165_0.760|GO:0008150_0.742|GO:0005622_0.726|GO:0009987_0.696|GO:0043226_0.684|GO:0043229_0.676|GO:0043228_0.554|GO:0043232_0.554|GO:0016020_0.546|GO:0003674_0.506
|
IPR003958+196-243+|IPR009072+159-275_212-275+|IPR050568+191-277+
|
— |
PF00808+196-243+Histone-like_transcription_factor_(CBF/NF-Y)_and_archaeal_histone
|
— |
PTHR10252+191-277+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-218;284-291
|
1.000
|
219-283
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.894
|
31534.940
|
10.587
|
20.500
|
31.615
|
8.591
|
58.763
|
41.237
|
20.619
|
10.997
|
54.296
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
violet
|
773.116
|
530.002
|
444.940
|
443.177
|
584.203
|
481.571
|
832.944
|
319.779
|
675.541
|
1511.998
|
1153.516
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.484
|
-0.395
|
— |
0.366
|
-0.264
|
0.801
|
-0.698
|
1.525
|
— | — | — | — | — |
No JSON data available for plots.