SCN Proteipedia

Hg_chrom9_TN10mRNA_17790

Organism: Heterodera glycines Gene Locus: chr9:5871570-5878646 Feature type: polypeptide

Protein Sequence

Length: 1,031

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.06	0.767	1.111	0.936	1.018	1.517	0.635	2.473	0.797	1.101	0.5	1.084	1.024	1.045	1.287	1.386	0.859	0.955	0.448	0.685	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16816	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	0.975

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RKRK,RRQMMKKIIQKHRRH	—	—	—	—	—	—	0.000	—	—	0.891	0.062	0.013	0.252	0.023	0.045	0.027	0.122	0.048	0.055

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0013080	1.000	1.000	Hsc_gene_8600.t1	—	—	—	KAI1730531.1 zinc finger protein sdc-1 [Ditylenchus destructor]	No	-0.700

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.964\|GO:0009987_0.916\|GO:0065007_0.909\|GO:0050789_0.899\|GO:0050794_0.889\|GO:0005575_0.872\|GO:0110165_0.872\|GO:0008152_0.853\|GO:0044238_0.840\|GO:0043170_0.832\|GO:0032502_0.821\|GO:0009058_0.819\|GO:0044237_0.817\|GO:0005622_0.813\|GO:0019222_0.810\|GO:0031323_0.810\|GO:0080090_0.801\|GO:0060255_0.799\|GO:0009059_0.796\|GO:0044249_0.796\|GO:0010467_0.788\|GO:0006139_0.785\|GO:0048519_0.785\|GO:0009889_0.778\|GO:0031326_0.778\|GO:0034654_0.775\|GO:0010468_0.774\|GO:0010556_0.774\|GO:0016020_0.773\|GO:0090304_0.769\|GO:0016070_0.768\|GO:0032774_0.768\|GO:0141187_0.768\|GO:0048523_0.764\|GO:0043226_0.761\|GO:0019219_0.757\|GO:0016043_0.756\|GO:0071840_0.756\|GO:0051252_0.751\|GO:0006351_0.744\|GO:0006355_0.743\|GO:0043229_0.743\|GO:2001141_0.743\|GO:0009892_0.723\|GO:0031324_0.720\|GO:0010605_0.718\|GO:0006357_0.716\|GO:0006366_0.716\|GO:0043227_0.711\|GO:0009890_0.709\|GO:0010558_0.709\|GO:0031327_0.709\|GO:0045934_0.700\|GO:0051253_0.700\|GO:0043231_0.698\|GO:0022414_0.697\|GO:0045892_0.696\|GO:1902679_0.696\|GO:0003006_0.693\|GO:0000122_0.689\|GO:0005634_0.682\|GO:0006325_0.682\|GO:0006338_0.680\|GO:0040029_0.679\|GO:0007530_0.673\|GO:0007549_0.670\|GO:0042464_0.670\|GO:0043228_0.641\|GO:0043232_0.641\|GO:0031974_0.605\|GO:0031981_0.605\|GO:0043233_0.605\|GO:0070013_0.605\|GO:0005694_0.572\|GO:0000228_0.540\|GO:0000803_0.540\|GO:0000805_0.540	IPR013087+222-244_224-244_250-270_386-407_422-443_422-449_422-454_670-693_672-690_672-693_699-719_916-939_916-944_918-939+\|IPR036236+222-270_385-443+\|IPR050888+387-943+	SM00355+222-244_250-270_386-407_422-449_670-693_699-719_916-939+	PF00096+422-443+Zinc_finger,_C2H2_type\|PF13912+672-690+C2H2-type_zinc_finger	—	PTHR24406+387-943+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	481-646;944-1031	2.000	1-480;647-943	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.572	114170.640	6.453	-1.500	26.770	11.542	50.921	49.079	14.549	12.221	53.249

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	1972.543	1818.790	867.838	823.317	868.174	681.655	1200.787	672.175	614.679	5569.092	3445.772

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.298	-1.281	—	—	-0.335	0.827	—	0.979	-3.287	—	-2.278	—	—

No JSON data available for plots.

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