Hg_chrom9_TN10mRNA_17791
Organism: Heterodera glycines Gene Locus: chr9:5879497-5882162 Feature type: polypeptideProtein Sequence
Length: 174
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.203 | 0.401 | 1.045 | 0.595 | 0.383 | 1.474 | 0.821 | 0.862 | 1.405 | 0.699 | 0.697 | 2.366 | 0.639 | 1.768 | 1.759 | 1.56 | 0.377 | 1.045 | 1.326 | 0.507 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16817
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.107
|
0.821
|
0.143
|
0.075
|
0.010
|
0.180
|
0.043
|
0.111
|
0.119
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004992
|
2.000
|
1.000
|
Hsc_gene_8598.t1
|
Hsc_gene_8598.t1
|
— |
C4QV79.1 Respiratory supercomplex factor 1, mitochondrial [Komagataella phaffii GS115]
|
RGB30165.1 hypoxia induced protein conserved region-domain-containing protein [Rhizophagus diaphanus] [Rhizophagus sp. MUCL 43196]
|
WP_017841185
|
0.400
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.636|GO:0110165_0.613|GO:0008150_0.569|GO:0016020_0.537
|
IPR007667+66-157_92-142+|IPR050355+77-149+
|
— |
PF04588+92-142+Hypoxia_induced_protein_conserved_region
|
— |
PTHR12297+77-149+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-60;153-174
|
1.000
|
61-152
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.898
|
18982.840
|
10.511
|
10.500
|
22.989
|
7.471
|
43.678
|
56.322
|
14.943
|
8.046
|
55.747
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
darkorange
|
231.451
|
325.192
|
257.597
|
253.441
|
309.477
|
269.476
|
309.192
|
165.030
|
61.566
|
257.897
|
173.755
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.566
|
-0.497
|
— |
0.257
|
— |
0.208
|
-0.815
|
1.049
|
— | — | — | — | — |
No JSON data available for plots.