Hg_chrom9_TN10mRNA_17792
Organism: Heterodera glycines Gene Locus: chr9:5882341-5886829 Feature type: polypeptideProtein Sequence
Length: 535
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.782 | 0.956 | 1.02 | 0.516 | 1.09 | 1.198 | 0.89 | 1.589 | 1.288 | 1.01 | 0.481 | 2.529 | 1.765 | 0.971 | 1.717 | 0.694 | 0.827 | 0.85 | 1.006 | 0.825 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16818
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
RRYREAKYDAFRRRHP,RRSARRYREAKYDAFRRRH
|
59-84
|
0.982
|
— | — | — | — |
0.000
|
— | — |
0.059
|
0.851
|
0.020
|
0.180
|
0.072
|
0.061
|
0.143
|
0.014
|
0.084
|
0.068
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001820
|
3.000
|
1.000
|
Hsc_gene_8597.t1
|
Hsc_gene_8597.t1
|
— |
Q6DCP1.1 FAD-dependent oxidoreductase domain-containing protein 1 [Xenopus laevis]
|
KAI1707943.1 FAD dependent oxidoreductase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.779|GO:0110165_0.775|GO:0005622_0.713|GO:0016020_0.693|GO:0005737_0.661|GO:0043226_0.655|GO:0043229_0.651|GO:0008150_0.637|GO:0043227_0.620|GO:0043231_0.604|GO:0009987_0.524
|
IPR006076+99-502+|IPR036188+97-527_100-504+
|
— |
PF01266+99-502+FAD_dependent_oxidoreductase
|
— |
PTHR13847+95-529+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-535
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.634
|
61304.970
|
7.081
|
5.500
|
26.916
|
13.645
|
45.607
|
54.393
|
14.766
|
12.150
|
45.981
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
779.803
|
663.509
|
558.532
|
850.994
|
1050.041
|
714.399
|
643.518
|
398.105
|
611.206
|
1123.569
|
903.985
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.478
|
0.222
|
0.716
|
0.272
|
-0.541
|
— |
-0.947
|
0.835
|
— | — | — | — | — |
No JSON data available for plots.