Hg_chrom9_TN10mRNA_17793
Organism: Heterodera glycines Gene Locus: chr9:5898082-5932339 Feature type: polypeptideProtein Sequence
Length: 1,205
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.695 | 1.081 | 1.283 | 0.687 | 1.12 | 1.617 | 0.692 | 1.411 | 0.885 | 1.032 | 0.842 | 1.22 | 1.014 | 0.926 | 1.27 | 0.889 | 0.884 | 1.27 | 1.085 | 0.976 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16819
|
— |
Hg_chrom9_TN10gene_16819
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRQK,KKIQANGLVVRKRPE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.654
|
0.172
|
0.005
|
0.574
|
0.108
|
0.096
|
0.069
|
0.140
|
0.126
|
0.099
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001470
|
1.000
|
4.000
|
Hsc_gene_8596.t1;Hsc_gene_8596.t2;Hsc_gene_8596.t3;Hsc_gene_8596.t4
|
Hsc_gene_8596.t1;Hsc_gene_8596.t2;Hsc_gene_8596.t3;Hsc_gene_8596.t4;Hsc_gene_8596.t5
|
— | — |
KAF7636515.1 hypothetical protein Mgra_00004103 [Meloidogyne graminicola]
|
No
|
0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2;224-268;706-831;1103-1205
|
3.000
|
3-223;269-705;832-1102
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.529
|
136976.230
|
6.177
|
-7.000
|
28.382
|
11.203
|
50.954
|
49.046
|
14.606
|
13.776
|
50.290
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
2934.727
|
3012.168
|
2224.609
|
2865.886
|
3618.540
|
3570.701
|
4266.912
|
2249.976
|
1380.452
|
3625.797
|
2663.506
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.666
|
-0.209
|
0.474
|
0.304
|
— |
0.268
|
-0.772
|
1.066
|
— |
1.224
|
— | — | — |
No JSON data available for plots.