Hg_chrom9_TN10mRNA_17794
Organism: Heterodera glycines Gene Locus: chr9:5905289-5908902 Feature type: polypeptideProtein Sequence
Length: 535
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.782 | 0.913 | 1.02 | 0.516 | 1.09 | 1.198 | 0.89 | 1.589 | 1.329 | 1.01 | 0.481 | 2.529 | 1.765 | 0.971 | 1.717 | 0.721 | 0.797 | 0.85 | 1.006 | 0.825 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16820
|
Hg_chrom9_TN10gene_16820
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
RRYREAKYDAFRRRHP,RRSARRYREAKYDAFRRRH
|
59-84
|
0.982
|
— | — | — | — |
0.000
|
— | — |
0.048
|
0.827
|
0.022
|
0.204
|
0.097
|
0.058
|
0.157
|
0.021
|
0.086
|
0.089
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001820
|
3.000
|
1.000
|
Hsc_gene_8597.t1
|
Hsc_gene_8597.t1
|
— |
Q6DCP1.1 FAD-dependent oxidoreductase domain-containing protein 1 [Xenopus laevis]
|
KAI1707943.1 FAD dependent oxidoreductase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.780|GO:0110165_0.775|GO:0005622_0.714|GO:0016020_0.694|GO:0005737_0.661|GO:0043226_0.657|GO:0043229_0.653|GO:0008150_0.636|GO:0043227_0.621|GO:0043231_0.605|GO:0009987_0.524
|
IPR006076+99-502+|IPR036188+97-527_100-504+
|
— |
PF01266+99-502+FAD_dependent_oxidoreductase
|
— |
PTHR13847+95-529+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-535
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.634
|
61290.000
|
7.081
|
5.500
|
26.916
|
13.645
|
45.421
|
54.579
|
14.766
|
12.150
|
45.794
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.