SCN Proteipedia

Hg_chrom9_TN10mRNA_17810

Organism: Heterodera glycines Gene Locus: chr9:6012419-6026890 Feature type: polypeptide

Protein Sequence

Length: 975

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.978	1.145	0.802	0.778	0.581	2.551	1.368	1.333	0.684	0.776	0.264	2.896	0.598	1.361	0.816	1.626	1.059	0.591	0.631	0.332	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16834	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	0.985

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	PGRNPRRRANTMEAATKAVIDKKRRGARKR	—	—	91-111	0.960	—	—	0.000	—	—	0.887	0.168	0.019	0.417	0.036	0.139	0.040	0.006	0.088	0.024

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003271	2.000	1.000	Hsc_gene_8579.t1	Hsc_gene_8580.t1	—	O16850.3 Forkhead box protein O [Caenorhabditis elegans]	KAI1726849.1 forkhead domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003700\|GO:0006355\|GO:0043565	GO:0008150_0.968\|GO:0009987_0.863\|GO:0065007_0.770\|GO:0050789_0.762\|GO:0050794_0.753\|GO:0005575_0.716\|GO:0110165_0.715\|GO:0003674_0.706\|GO:0032502_0.704\|GO:0008152_0.688\|GO:0044238_0.688\|GO:0005488_0.682\|GO:0048856_0.680\|GO:0009058_0.671\|GO:0019222_0.666\|GO:0031323_0.666\|GO:0044237_0.666\|GO:0080090_0.661\|GO:0043170_0.651\|GO:0032501_0.650\|GO:0060255_0.648\|GO:0005622_0.644\|GO:0009059_0.634\|GO:0009889_0.634\|GO:0010556_0.634\|GO:0031326_0.634\|GO:0044249_0.634\|GO:0010467_0.632\|GO:0010468_0.632\|GO:0006139_0.624\|GO:0016070_0.623\|GO:0019219_0.623\|GO:0051252_0.623\|GO:0090304_0.623\|GO:0034654_0.621\|GO:0141187_0.613\|GO:0032774_0.611\|GO:0006351_0.608\|GO:0006355_0.608\|GO:2001141_0.608\|GO:0007275_0.600\|GO:0016020_0.597\|GO:0097159_0.592\|GO:0048518_0.588\|GO:0003676_0.586\|GO:0043226_0.581\|GO:0043229_0.564\|GO:0048522_0.547\|GO:0003677_0.532\|GO:0048731_0.528\|GO:0043227_0.526\|GO:0043565_0.526\|GO:0009893_0.523\|GO:0031325_0.514\|GO:0010604_0.513\|GO:0043231_0.507\|GO:0048519_0.504\|GO:0009891_0.502\|GO:0031328_0.501	IPR001766+401-490_403-416_403-496_405-487_424-441_452-469+\|IPR030456+452-458+\|IPR036388+401-497+\|IPR036390+400-485+	SM00339+401-490+	PF00250+405-487+Forkhead_domain	G3DSA:1.10.10.10:FF:000032+399-491+Forkhead_box_protein_O4	PTHR45767+157-956+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-413;472-915;974-975	2.000	414-471;916-973	4lg0_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.905	102493.380	5.954	-8.000	16.308	6.769	49.026	50.974	8.410	7.897	60.308

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	greenyellow	6227.936	26335.897	6062.024	3233.647	1835.187	1578.357	1980.121	3331.156	2359.281	8844.115	6064.901

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-2.349	-3.163	-0.798	-0.849	-0.203	0.336	0.979	-0.612	-2.030	—	-2.004	—	—

No JSON data available for plots.

Back to Browser