Hg_chrom9_TN10mRNA_17814
Organism: Heterodera glycines Gene Locus: chr9:6041956-6043935 Feature type: polypeptideProtein Sequence
Length: 345
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.876 | 0.876 | 0.896 | 1.599 | 0.725 | 0.669 | 1.139 | 1.304 | 0.837 | 1.293 | 0.659 | 1.364 | 1.53 | 1.059 | 1.361 | 1.118 | 0.618 | 1.098 | 0.669 | 0.767 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16838
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
1-Not_Clustered
|
0.449
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
mitochondria
|
— |
12-38
|
0.986
|
— | — |
1-20
|
0.983
|
1.000
|
0.000
|
0.000
|
0.177
|
0.333
|
0.040
|
0.252
|
0.172
|
0.116
|
0.210
|
0.030
|
0.163
|
0.924
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000942
|
4.000
|
2.000
|
Hsc_gene_3243.t1;Hsc_gene_8577.t1
|
Hsc_gene_3243.t1
|
— | — |
KAI3417487.1 Brain-specific serine protease 4 [Globodera pallida]
|
GMH43535
|
0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006508
|
GO:0008150_0.939|GO:0005575_0.733|GO:0003674_0.709|GO:0110165_0.664|GO:0003824_0.582|GO:0016020_0.568|GO:0032501_0.541|GO:0071944_0.535|GO:0008152_0.533|GO:0016787_0.524|GO:0044238_0.520|GO:0140096_0.516|GO:0008233_0.504|GO:0005886_0.501
|
IPR001254+52-306_54-311_66-283+|IPR009003+49-282+|IPR043504+46-294+|IPR050430+41-283+
|
SM00020+52-306+
|
PF00089+66-283+Trypsin
|
— |
PTHR24276+41-283+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-345
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.892
|
37745.420
|
8.184
|
10.500
|
22.899
|
11.594
|
40.870
|
59.130
|
13.623
|
9.275
|
54.783
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
blue
|
176.632
|
18.496
|
22.347
|
18.140
|
19.787
|
28.146
|
21.924
|
16.616
|
12.050
|
709.182
|
410.411
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
-0.867
|
— |
-6.023
|
— |
-4.887
|
— | — |