Hg_chrom9_TN10mRNA_17817
Organism: Heterodera glycines Gene Locus: chr9:6059635-6060531 Feature type: polypeptideProtein Sequence
Length: 95
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.612 | 1.958 | 1.148 | 1.815 | 0.526 | 2.159 | 0.877 | 0.526 | 0.936 | 0.427 | 0.638 | 1.238 | 1.754 | 1.619 | 1.719 | 0.902 | 0.518 | 0.478 | 0.81 | 1.238 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16841
|
— | — |
1.556
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-Not_Clustered
|
0.706
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.550
|
0.077
|
0.007
|
0.711
|
0.182
|
0.064
|
0.149
|
0.027
|
0.202
|
0.301
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004995
|
2.000
|
1.000
|
Hsc_gene_8578.t1
|
Hsc_gene_3247.t1;Hsc_gene_3247.t2;Hsc_gene_8578.t1;Hsc_gene_8578.t2
|
— | — |
KAI1726802.1 HEAT-like repeat domain-containing protein [Ditylenchus destructor]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.924|GO:0005575_0.918|GO:0110165_0.905|GO:0009987_0.868|GO:0005622_0.818|GO:0051179_0.711|GO:0006810_0.702|GO:0051234_0.702|GO:0051641_0.696|GO:0033036_0.686|GO:0070727_0.685|GO:0071705_0.685|GO:0008104_0.684|GO:0051649_0.684|GO:0045184_0.681|GO:0015031_0.678|GO:0046907_0.676|GO:0033365_0.675|GO:0006886_0.674|GO:0072594_0.674|GO:0006606_0.670|GO:0006913_0.670|GO:0034504_0.670|GO:0051169_0.670|GO:0051170_0.670|GO:0065007_0.543|GO:0050789_0.530|GO:0016020_0.525|GO:0043226_0.525|GO:0050794_0.519|GO:0003674_0.515|GO:0005488_0.515
|
IPR011989+42-95+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4;93-95
|
1.000
|
5-92
|
5j3v_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.967
|
10880.150
|
8.344
|
3.500
|
23.158
|
12.632
|
49.474
|
50.526
|
13.684
|
9.474
|
53.684
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
20.081
|
1.918
|
12.184
|
21.945
|
3.008
|
3.890
|
10.837
|
4.678
|
36.513
|
38.548
|
37.676
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.434
|
3.382
|
0.964
|
-2.907
|
— |
1.489
|
— |
1.353
|
— | — | — | — | — |
No JSON data available for plots.