Hg_chrom9_TN10mRNA_17825
Organism: Heterodera glycines Gene Locus: chr9:6094763-6096684 Feature type: polypeptideProtein Sequence
Length: 282
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.948 | 0.907 | 0.903 | 1.834 | 0.65 | 0.909 | 1.055 | 1.064 | 0.946 | 1.39 | 0.913 | 1.252 | 1.478 | 0.75 | 0.868 | 1.165 | 0.698 | 1.236 | 0.818 | 0.417 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16849
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
chloroplast
|
— |
48-69
|
0.894
|
33-65
|
0.965
|
1-20
|
0.996
|
1.000
|
0.000
|
0.000
|
0.296
|
0.600
|
0.103
|
0.273
|
0.265
|
0.107
|
0.109
|
0.010
|
0.182
|
0.855
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000942
|
4.000
|
2.000
|
Hsc_gene_3243.t1;Hsc_gene_8577.t1
|
— | — | — |
KAI3417487.1 Brain-specific serine protease 4 [Globodera pallida]
|
GMH43535
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006508
|
GO:0008150_0.940|GO:0005575_0.726|GO:0003674_0.636|GO:0110165_0.545|GO:0008152_0.515|GO:0003824_0.507|GO:0019538_0.504|GO:0043170_0.504|GO:0044238_0.504
|
IPR001254+71-282_76-279_83-282+|IPR009003+67-276+|IPR043504+72-166_167-279+|IPR050430+74-279+
|
SM00020+71-282+
|
PF00089+76-279+Trypsin
|
— |
PTHR24276+74-279+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-282
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.842
|
30480.300
|
7.967
|
7.000
|
21.277
|
9.929
|
41.135
|
58.865
|
12.411
|
8.865
|
55.674
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
3.467
|
1.080
|
1.817
|
2.127
|
1.183
|
1.750
|
0.811
|
0.536
|
13.332
|
1.679
|
6.673
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |