Hg_chrom9_TN10mRNA_17831
Organism: Heterodera glycines Gene Locus: chr9:6162646-6165562 Feature type: polypeptideProtein Sequence
Length: 296
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.943 | 1.257 | 0.983 | 0.233 | 1.577 | 2.079 | 0.241 | 0.845 | 1.201 | 1.187 | 1.484 | 1.789 | 1.126 | 0.845 | 1.241 | 0.82 | 0.388 | 0.819 | 1.04 | 0.795 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16855
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — |
17-37
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.737
|
0.162
|
0.025
|
0.413
|
0.034
|
0.038
|
0.079
|
0.004
|
0.074
|
0.054
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004998
|
2.000
|
1.000
|
Hsc_gene_4187.t1
|
— | — |
O93307.1 Homeobox protein SIX6 [Gallus gallus]
|
CDQ03568.1 BMA-CEH-32, isoform a [Brugia malayi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677
|
GO:0008150_0.836|GO:0009987_0.782|GO:0003674_0.719|GO:0005488_0.714|GO:0005575_0.704|GO:0110165_0.699|GO:0005622_0.683|GO:0065007_0.670|GO:0050789_0.666|GO:0043226_0.657|GO:0050794_0.648|GO:0043229_0.642|GO:0016020_0.610|GO:0032502_0.601|GO:0048856_0.601|GO:0032501_0.586|GO:0097159_0.578|GO:0043227_0.551|GO:0003676_0.550|GO:0008152_0.548|GO:0043170_0.548|GO:0007275_0.547|GO:0044238_0.536|GO:0009058_0.535|GO:0009059_0.535|GO:0044237_0.535|GO:0044249_0.535|GO:0006139_0.526|GO:0010467_0.524|GO:0043231_0.517|GO:0019222_0.514|GO:0031323_0.512|GO:0003677_0.511|GO:0060255_0.508|GO:0090304_0.506|GO:0034654_0.505|GO:0141187_0.505|GO:0080090_0.502
|
IPR001356+163-223_166-227_169-215_169-222+|IPR009057+167-227+|IPR031701+71-163+
|
SM00389+166-227+
|
PF00046+169-222+Homeodomain|PF16878+71-163+Transcriptional_regulator,_SIX1,_N-terminal_SD_domain
|
— |
PTHR10390+91-239+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
143-296
|
1.000
|
1-142
|
4egc_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.601
|
34630.590
|
8.825
|
5.500
|
32.432
|
9.797
|
54.054
|
45.946
|
17.568
|
14.865
|
39.527
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
62.343
|
7.828
|
11.855
|
7.725
|
5.817
|
7.033
|
62.448
|
10.333
|
0.946
|
229.653
|
131.635
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
3.156
|
— |
2.733
|
-7.767
|
— |
-5.044
|
— |
7.214
|
No JSON data available for plots.