SCN Proteipedia

Hg_chrom9_TN10mRNA_17832

Organism: Heterodera glycines Gene Locus: chr9:6178382-6182423 Feature type: polypeptide

Protein Sequence

Length: 292

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.558	1.115	0.747	0.236	1.427	1.493	0.367	1.541	0.913	1.573	1.453	2.619	1.332	1.12	1.188	1.321	0.618	0.363	1.054	0.604	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16856	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	3-Not_Clustered	0.908

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	HRVRKRHPFPPIER,KRHPFPPIERHLKLKSTRR	24-44	0.993	—	—	—	—	0.000	—	—	0.872	0.128	0.011	0.341	0.027	0.025	0.036	0.004	0.029	0.037

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004997	2.000	1.000	Hsc_gene_4183.t1	Hsc_gene_4183.t1	—	O43812.1 Double homeobox protein 1 [Homo sapiens]	CDS28602.1 sine oculis homeobox 3/6 [Hymenolepis microstoma];CUU99223.1 sine oculis homeobox 3/6 [Hymenolepis microstoma]	No	-0.090

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677	GO:0008150_0.850\|GO:0009987_0.800\|GO:0065007_0.719\|GO:0050789_0.718\|GO:0005575_0.715\|GO:0110165_0.710\|GO:0005622_0.707\|GO:0003674_0.696\|GO:0005488_0.696\|GO:0050794_0.693\|GO:0043226_0.686\|GO:0043229_0.682\|GO:0032502_0.643\|GO:0048856_0.643\|GO:0016020_0.641\|GO:0032501_0.618\|GO:0043227_0.606\|GO:0008152_0.588\|GO:0043170_0.588\|GO:0043231_0.587\|GO:0097159_0.585\|GO:0009058_0.583\|GO:0009059_0.583\|GO:0044237_0.583\|GO:0044249_0.583\|GO:0019222_0.580\|GO:0007275_0.577\|GO:0031323_0.577\|GO:0010467_0.575\|GO:0003676_0.570\|GO:0006139_0.567\|GO:0044238_0.567\|GO:0090304_0.563\|GO:0060255_0.562\|GO:0080090_0.561\|GO:0034654_0.552\|GO:0141187_0.552\|GO:0009889_0.547\|GO:0031326_0.547\|GO:0010556_0.543\|GO:0016070_0.541\|GO:0032774_0.541\|GO:0005634_0.539\|GO:0010468_0.535\|GO:0048731_0.533\|GO:0003677_0.526\|GO:0019219_0.526\|GO:0043565_0.517\|GO:0006351_0.513\|GO:0030154_0.508\|GO:0048869_0.508\|GO:0006355_0.506\|GO:0051252_0.506\|GO:2001141_0.506	IPR001356+176-236_178-240_179-234+\|IPR009057+179-249+\|IPR031701+76-170+	SM00389+178-240+	PF00046+179-234+Homeodomain\|PF16878+76-170+Transcriptional_regulator,_SIX1,_N-terminal_SD_domain	—	PTHR10390+72-265+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	188-292	1.000	1-187	4egc_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.857	34099.220	9.858	12.500	31.164	11.301	54.795	45.205	18.493	12.671	38.699

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	cyan	darkmagenta	545.515	204.306	264.467	199.499	179.995	216.326	278.984	329.481	612.797	1299.634	1005.275

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	—	-0.297	—	0.280	0.376	0.503	—	—	—	-2.527	—	—

No JSON data available for plots.

Back to Browser