SCN Proteipedia

Hg_chrom9_TN10mRNA_17833

Organism: Heterodera glycines Gene Locus: chr9:6191914-6193647 Feature type: polypeptide

Protein Sequence

Length: 230

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.708	0.809	0.632	0.3	1.377	1.672	0.311	1.957	0.966	1.293	1.713	2.302	1.208	1.254	1.154	0.87	0.57	0.659	1.338	1.023	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16857	—	—	0.667	—	—	1.000	1.000	1.000	1.000	1.000	—	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	EKKKRK	11-31	0.927	—	—	—	—	0.000	—	—	0.933	0.159	0.004	0.334	0.041	0.032	0.028	0.001	0.022	0.072

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001472	2.000	3.000	Hsc_gene_4186.t1;Hsc_gene_4186.t2;Hsc_gene_4186.t3	—	—	O42406.2 Homeobox protein SIX3 [Gallus gallus]	GBM52024.1 Homeobox protein SIX3 [Araneus ventricosus]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677	GO:0008150_0.835\|GO:0009987_0.783\|GO:0003674_0.726\|GO:0005488_0.719\|GO:0005575_0.700\|GO:0065007_0.700\|GO:0110165_0.691\|GO:0050789_0.689\|GO:0005622_0.687\|GO:0050794_0.676\|GO:0043226_0.660\|GO:0043229_0.653\|GO:0032502_0.633\|GO:0048856_0.623\|GO:0032501_0.619\|GO:0016020_0.614\|GO:0097159_0.603\|GO:0003676_0.587\|GO:0043227_0.580\|GO:0008152_0.578\|GO:0043170_0.578\|GO:0007275_0.574\|GO:0044238_0.571\|GO:0009058_0.568\|GO:0009059_0.567\|GO:0044237_0.567\|GO:0044249_0.567\|GO:0010467_0.559\|GO:0006139_0.555\|GO:0019222_0.548\|GO:0043231_0.548\|GO:0031323_0.542\|GO:0090304_0.541\|GO:0034654_0.537\|GO:0060255_0.533\|GO:0003677_0.530\|GO:0080090_0.529\|GO:0141187_0.528\|GO:0048731_0.527\|GO:0016070_0.525\|GO:0032774_0.524\|GO:0009889_0.520\|GO:0031326_0.520\|GO:0005634_0.512\|GO:0010468_0.511\|GO:0010556_0.511\|GO:0043565_0.510	IPR001356+129-191_135-185_136-187_136-188+\|IPR009057+128-194+\|IPR031701+47-123+	SM00389+129-191+	PF00046+135-185+Homeodomain\|PF16878+47-123+Transcriptional_regulator,_SIX1,_N-terminal_SD_domain	G3DSA:1.10.10.60:FF:000046+129-193+SIX_homeobox_3	PTHR10390+49-192+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	164-230	1.000	1-163	4egc_A	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.626	27167.510	10.150	16.500	32.609	13.478	52.174	47.826	20.870	11.739	36.957

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	tan	15.717	2.303	3.028	6.298	3.572	2.502	48.829	3.600	56.615	0.000	24.264

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	1.318	1.160	—	—	4.294	—	3.907	4.877	—	—	—	—

No JSON data available for plots.

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