Hg_chrom9_TN10mRNA_17844
Organism: Heterodera glycines Gene Locus: chr9:6247198-6251818 Feature type: polypeptideProtein Sequence
Length: 440
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.899 | 0.634 | 0.909 | 0.313 | 1.098 | 1.282 | 0.649 | 1.591 | 1.364 | 1.566 | 0.379 | 2.005 | 1.326 | 1.18 | 1.623 | 0.942 | 0.782 | 0.93 | 1.224 | 0.535 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16867
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|lysosome_vacuole
|
— | — | — | — |
20-70
|
0.995
|
— | — |
0.000
|
— | — |
0.189
|
0.214
|
0.045
|
0.636
|
0.405
|
0.684
|
0.523
|
0.043
|
0.333
|
0.108
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013091
|
1.000
|
1.000
|
Hsc_gene_4197.t1
|
— | — | — |
KAI1726799.1 CRAL/TRIO domain-containing protein [Ditylenchus destructor]
|
No
|
-0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.624|GO:0110165_0.617|GO:0008150_0.613|GO:0016020_0.572|GO:0005622_0.548|GO:0003674_0.534|GO:0005737_0.501
|
IPR001251+124-289_127-298_129-295_145-289+|IPR036273+50-115+|IPR036865+67-318_143-306+|IPR053302+61-424+
|
SM00516+127-298+
|
PF00650+145-289+CRAL/TRIO_domain
|
— |
PTHR47159+61-424+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-440
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.571
|
49918.510
|
6.739
|
2.000
|
25.227
|
11.364
|
44.318
|
55.682
|
13.636
|
11.591
|
45.455
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
92.193
|
53.500
|
22.525
|
8.969
|
196.982
|
457.189
|
28.801
|
65.212
|
52.668
|
51.401
|
51.944
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.482
|
-2.712
|
-1.215
|
4.422
|
1.231
|
-3.978
|
-2.916
|
-1.035
|
— | — | — | — | — |
No JSON data available for plots.