Hg_chrom9_TN10mRNA_17847
Organism: Heterodera glycines Gene Locus: chr9:6268440-6270829 Feature type: polypeptideProtein Sequence
Length: 303
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.075 | 0.844 | 0.96 | 1.024 | 1.21 | 0.931 | 0.707 | 2.475 | 0.88 | 1.115 | 0.65 | 1.747 | 1.008 | 0.698 | 1.347 | 0.613 | 1.244 | 1.2 | 0.762 | 0.874 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16870
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.734
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — |
10-31
|
1.000
|
— | — |
0.000
|
— | — |
0.090
|
0.910
|
0.018
|
0.428
|
0.054
|
0.112
|
0.118
|
0.015
|
0.074
|
0.083
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013094
|
1.000
|
1.000
|
Hsc_gene_4202.t1
|
Hsc_gene_4202.t1;Hsc_gene_588.t1
|
— |
B4F6K2.1 Hydroxyacylglutathione hydrolase, mitochondrial [Xenopus tropicalis]
|
KAI1717300.1 metallo-beta-lactamase superfamily domain-containing protein [Ditylenchus destructor]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004416|GO:0019243
|
GO:0008150_0.760|GO:0009987_0.655|GO:0005575_0.652|GO:0110165_0.640|GO:0003674_0.574|GO:0005622_0.568|GO:0005737_0.543|GO:0008152_0.514
|
IPR001279+39-218_82-218+|IPR017782+29-300_32-300+|IPR032282+219-300+|IPR035680+32-218+|IPR036866+29-300_29-303+
|
SM00849+39-218+
|
PF00753+82-218+Metallo-beta-lactamase_superfamily|PF16123+219-300+Hydroxyacylglutathione_hydrolase_C-terminus
|
— |
PTHR11935+24-301+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-303
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.594
|
34075.770
|
6.768
|
2.500
|
28.383
|
12.541
|
47.525
|
52.475
|
15.842
|
12.541
|
50.495
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1115.601
|
1122.247
|
935.717
|
1271.739
|
1635.968
|
1629.786
|
1558.066
|
1166.924
|
709.002
|
853.834
|
791.763
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.491
|
— |
0.551
|
0.332
|
— | — |
-0.592
|
0.561
|
— | — | — | — | — |
No JSON data available for plots.