Hg_chrom9_TN10mRNA_17855
Organism: Heterodera glycines Gene Locus: chr9:6315447-6316795 Feature type: polypeptideProtein Sequence
Length: 109
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.28 | 1.28 | 1.168 | 0.316 | 0.917 | 1.176 | 1.092 | 0.459 | 1.427 | 1.612 | 0.556 | 2.698 | 0.765 | 0.706 | 0.562 | 0.786 | 0.902 | 1.112 | 0.706 | 0.27 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16878
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.794
|
0.137
|
0.019
|
0.526
|
0.052
|
0.073
|
0.035
|
0.011
|
0.056
|
0.156
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005002
|
2.000
|
1.000
|
Hsc_gene_4218.t1
|
Hsc_gene_4218.t1;Hsc_gene_4218.t2
|
— | — |
KAI1728367.1 KH domain-containing protein [Ditylenchus destructor]
|
MDR3898611
|
0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000178|GO:0003723
|
GO:0008150_0.921|GO:0009987_0.846|GO:0005575_0.758|GO:0110165_0.741|GO:0008152_0.733|GO:0044237_0.723|GO:0043170_0.718|GO:0009058_0.717|GO:0009059_0.710|GO:0044249_0.710|GO:0010467_0.708|GO:0065007_0.664|GO:0050789_0.643|GO:0016020_0.628|GO:0005622_0.627|GO:0050794_0.624|GO:0005737_0.607|GO:0043226_0.575|GO:0044238_0.565|GO:0019222_0.561|GO:0031323_0.555|GO:0060255_0.554|GO:0043229_0.553|GO:0006139_0.549|GO:0009889_0.547|GO:0010556_0.546|GO:0031326_0.546|GO:0010468_0.544|GO:0090304_0.537|GO:0043227_0.533|GO:0043231_0.522|GO:0032991_0.501
|
IPR004088+8-53+|IPR026699+1-86+|IPR036612+1-85_8-82+|IPR049469+8-79+
|
— |
PF15985+8-53+KH_domain
|
— |
PTHR21321+1-86+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
91-109
|
1.000
|
1-90
|
2nn6_G
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.632
|
11589.310
|
4.226
|
-5.500
|
19.266
|
5.505
|
40.367
|
59.633
|
7.339
|
11.927
|
55.046
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.