Hg_chrom9_TN10mRNA_17868
Organism: Heterodera glycines Gene Locus: chr9:6386935-6392621 Feature type: polypeptideProtein Sequence
Length: 526
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.818 | 0.796 | 0.622 | 0.787 | 0.824 | 1.657 | 0.611 | 1.426 | 1.436 | 1.259 | 0.288 | 1.677 | 2.482 | 0.877 | 1.125 | 1.005 | 0.561 | 0.749 | 3.217 | 1.566 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16891
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.097
|
0.103
|
0.059
|
0.103
|
0.817
|
0.219
|
0.426
|
0.002
|
0.270
|
0.023
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013102
|
1.000
|
1.000
|
Hsc_gene_4223.t1
|
Hsc_gene_4223.t1
|
— |
Q61263.2 Sterol O-acyltransferase 1 [Mus musculus]
|
KAH7723521.1 Protein MBOA-1 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008374
|
GO:0008150_0.877|GO:0003674_0.868|GO:0003824_0.724|GO:0016740_0.681|GO:0016746_0.654|GO:0008152_0.649|GO:0016747_0.643|GO:0005575_0.634|GO:0008374_0.634|GO:0044238_0.634|GO:0110165_0.631|GO:0016020_0.602|GO:0006629_0.592|GO:0009987_0.591|GO:0071944_0.539|GO:0005886_0.536
|
IPR004299+269-494+|IPR014371+9-505_28-501+
|
— |
PF03062+269-494+MBOAT,_membrane-bound_O-acyltransferase_family
|
— |
PTHR10408+28-501+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-83
|
1.000
|
84-526
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.555
|
62026.270
|
6.762
|
2.500
|
18.631
|
21.293
|
38.973
|
61.027
|
10.266
|
8.365
|
41.255
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
733.956
|
56.235
|
3.878
|
20.091
|
760.395
|
1225.689
|
48.037
|
102.171
|
130.599
|
2281.923
|
1359.927
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-4.091
|
-1.621
|
2.485
|
5.209
|
0.706
|
-4.664
|
-3.708
|
— | — | — | — | — | — |
No JSON data available for plots.