Hg_chrom9_TN10mRNA_17871
Organism: Heterodera glycines Gene Locus: chr9:6414804-6419057 Feature type: polypeptideProtein Sequence
Length: 333
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.222 | 1.257 | 0.491 | 0.932 | 1.051 | 1.54 | 0.822 | 1.502 | 0.734 | 1.583 | 0.865 | 1.59 | 0.918 | 0.578 | 0.858 | 1.073 | 0.788 | 0.956 | 0.693 | 0.883 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16894
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.310
|
0.754
|
0.113
|
0.563
|
0.434
|
0.230
|
0.360
|
0.011
|
0.170
|
0.221
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013103
|
1.000
|
1.000
|
Hsc_gene_8747.t1
|
Hsc_gene_8747.t1
|
— |
Q17QW3.1 Retinol dehydrogenase 14 [Bos taurus]
|
KAH7701437.1 DHS-1 protein [Aphelenchus avenae]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.851|GO:0110165_0.851|GO:0008150_0.808|GO:0016020_0.677|GO:0003674_0.649|GO:0009987_0.647|GO:0005622_0.587|GO:0043226_0.573|GO:0065007_0.527|GO:0043229_0.523|GO:0043227_0.516|GO:0005737_0.510
|
IPR002347+8-25_9-156_98-109_213-230+|IPR036291+8-284+
|
— |
PF00106+9-156+short_chain_dehydrogenase
|
— |
PTHR24320+8-307+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
294-333
|
1.000
|
1-293
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.767
|
36598.900
|
8.053
|
8.000
|
21.922
|
10.210
|
45.646
|
54.354
|
12.913
|
9.009
|
49.850
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
778.223
|
434.230
|
508.173
|
483.660
|
618.307
|
610.423
|
988.945
|
623.211
|
532.984
|
1404.883
|
1031.212
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
0.322
|
— |
0.707
|
— |
0.808
|
— | — | — | — | — |
No JSON data available for plots.