Hg_chrom9_TN10mRNA_17872
Organism: Heterodera glycines Gene Locus: chr9:6419463-6422625 Feature type: polypeptideProtein Sequence
Length: 322
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.661 | 1.011 | 1.355 | 0.428 | 0.88 | 0.876 | 0.924 | 0.466 | 0.759 | 1.259 | 0.659 | 2.923 | 0.69 | 0.776 | 0.824 | 0.799 | 0.916 | 1.459 | 0.717 | 0.274 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16895
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.720
|
0.184
|
0.024
|
0.327
|
0.141
|
0.152
|
0.090
|
0.037
|
0.086
|
0.091
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013104
|
1.000
|
1.000
|
Hsc_gene_8748.t1
|
Hsc_gene_8748.t1
|
— |
Q9D0M0.2 Exosome complex exonuclease RRP42 [Mus musculus]
|
KAI1728371.1 3' exoribonuclease family, domain 1 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.828|GO:0110165_0.807|GO:0016020_0.720|GO:0005622_0.699|GO:0005737_0.699|GO:0008150_0.681|GO:0043226_0.628|GO:0043229_0.613|GO:0009987_0.608|GO:0043227_0.605|GO:0043231_0.593|GO:0003674_0.584|GO:0008152_0.533|GO:0005634_0.517|GO:0044237_0.507|GO:0044238_0.502
|
IPR001247+31-168+|IPR020568+2-222+|IPR027408+5-312+|IPR036345+195-305+|IPR050590+4-300+
|
— |
PF01138+31-168+3'_exoribonuclease_family,_domain_1
|
— |
PTHR11097+4-300+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-322
|
8r1o_E
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.628
|
34013.900
|
4.429
|
-12.500
|
22.050
|
5.280
|
40.994
|
59.006
|
9.317
|
12.733
|
59.938
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
623.691
|
433.182
|
627.237
|
533.097
|
597.799
|
440.297
|
845.300
|
364.240
|
1006.764
|
533.143
|
736.123
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.304
|
0.162
|
-0.125
|
— |
-0.427
|
0.952
|
-0.378
|
1.357
|
— | — | — | — | — |
No JSON data available for plots.