Hg_chrom9_TN10mRNA_17874
Organism: Heterodera glycines Gene Locus: chr9:6428259-6434361 Feature type: polypeptideProtein Sequence
Length: 520
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.671 | 0.85 | 1.119 | 0.597 | 1.122 | 0.986 | 0.595 | 1.635 | 0.94 | 1.611 | 0.787 | 1.357 | 1.068 | 0.888 | 1.413 | 1.181 | 0.883 | 1.049 | 1.036 | 0.848 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16897
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.897
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.307
|
0.166
|
0.031
|
0.642
|
0.258
|
0.384
|
0.189
|
0.004
|
0.534
|
0.081
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013105
|
1.000
|
1.000
|
Hsc_gene_8751.t1
|
Hsc_gene_8751.t1
|
— |
Q9NY99.2 Gamma-2-syntrophin [Homo sapiens]
|
KAF7633065.1 PDZ domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005198|GO:0005515
|
GO:0005575_0.887|GO:0110165_0.885|GO:0008150_0.775|GO:0016020_0.675|GO:0005622_0.606|GO:0009987_0.601|GO:0071944_0.582|GO:0005886_0.577|GO:0003674_0.558|GO:0043226_0.518
|
IPR001478+76-160_78-162_79-159_86-163+|IPR011993+187-275+|IPR015482+16-510+|IPR036034+61-168_64-175+|IPR041428+218-270+
|
SM00228+86-163+
|
PF00595+79-159+PDZ_domain|PF18012+218-270+PH_domain|PF23012+409-507+Syntrophin_C-terminal_PH_domain
|
— |
PTHR10554+16-510+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4;54-100
|
2.000
|
5-53;101-520
|
7qql_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.621
|
59158.540
|
6.956
|
4.500
|
28.269
|
11.346
|
49.423
|
50.577
|
15.385
|
12.885
|
47.500
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
451.042
|
564.167
|
371.072
|
107.352
|
42.630
|
229.771
|
182.949
|
853.170
|
178.166
|
958.020
|
623.797
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.833
|
-2.530
|
-1.681
|
-1.365
|
2.445
|
-0.320
|
1.789
|
-2.080
|
— | — | — | — | — |
No JSON data available for plots.