SCN Proteipedia

Hg_chrom9_TN10mRNA_17875

Organism: Heterodera glycines Gene Locus: chr9:6438086-6442358 Feature type: polypeptide

Protein Sequence

Length: 455

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.636	0.409	0.799	1.213	0.916	1.352	0.811	2.088	0.391	0.713	0.333	2.198	1.526	1.141	1.301	1.319	1.081	0.666	1.183	0.582	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16898	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	5-Not_Clustered	0.737

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.386	0.245	0.011	0.630	0.096	0.245	0.146	0.018	0.374	0.178

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0013106	1.000	1.000	Hsc_gene_8752.t2	Hsc_gene_8752.t1;Hsc_gene_8752.t2	—	—	KAI6178205.1 Regulator of G protein signaling domain protein [Aphelenchoides besseyi];KAI6192725.1 Regulator of G protein signaling domain protein [Aphelenchoides besseyi]	UAL68484	0.090

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0090090	GO:0008150_0.955\|GO:0009987_0.901\|GO:0065007_0.876\|GO:0050789_0.859\|GO:0050794_0.851\|GO:0032501_0.818\|GO:0050896_0.811\|GO:0032502_0.801\|GO:0048856_0.801\|GO:0007275_0.792\|GO:0048731_0.779\|GO:0051716_0.767\|GO:0030154_0.752\|GO:0048519_0.752\|GO:0048869_0.752\|GO:0007154_0.748\|GO:0023052_0.746\|GO:0007399_0.740\|GO:0048523_0.740\|GO:0016043_0.738\|GO:0071840_0.738\|GO:0048468_0.737\|GO:0022008_0.732\|GO:0007165_0.727\|GO:0010646_0.723\|GO:0048699_0.721\|GO:0023051_0.720\|GO:0048583_0.719\|GO:0009653_0.714\|GO:0030182_0.713\|GO:0007166_0.711\|GO:0009966_0.708\|GO:0048666_0.704\|GO:0030030_0.693\|GO:0120036_0.693\|GO:0031175_0.691\|GO:0000902_0.687\|GO:0009968_0.686\|GO:0010648_0.686\|GO:0023057_0.686\|GO:0048585_0.686\|GO:0048858_0.683\|GO:0120039_0.683\|GO:0048667_0.682\|GO:0048812_0.681\|GO:0007409_0.680\|GO:0061564_0.680\|GO:0016055_0.679\|GO:0030111_0.677\|GO:0007411_0.676\|GO:0097485_0.676\|GO:0030178_0.670\|GO:0005575_0.603\|GO:0110165_0.603\|GO:0003674_0.584\|GO:0005488_0.525	IPR001158+379-446+\|IPR029071+367-450+\|IPR036305+46-154+\|IPR038207+366-451+\|IPR043581+299-450+\|IPR044926+26-154+	—	PF00778+379-446+DIX_domain	—	PTHR46102+299-450+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	293-337	2.000	1-292;338-455	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.662	49518.480	6.794	3.500	22.637	13.187	45.495	54.505	12.747	9.890	56.703

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	turquoise	131.599	65.926	123.077	120.400	94.867	140.953	92.992	40.205	45.282	287.374	183.620

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.672	0.731	—	-0.377	0.587	-0.591	-1.923	1.355	—	—	—	—	—

No JSON data available for plots.

Back to Browser