Hg_chrom9_TN10mRNA_17882
Organism: Heterodera glycines Gene Locus: chr9:6556176-6558195 Feature type: polypeptideProtein Sequence
Length: 443
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.837 | 1.207 | 0.616 | 0.623 | 0.188 | 1.505 | 1.102 | 0.903 | 0.702 | 0.702 | 0.923 | 0.266 | 0.752 | 0.955 | 1.198 | 1.677 | 1.591 | 0.616 | 0.868 | 0.199 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16905
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.369
|
0.343
|
0.039
|
0.538
|
0.120
|
0.015
|
0.079
|
0.220
|
0.112
|
0.213
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
Q80YR5.2 Scaffold attachment factor B2 [Mus musculus]
|
KAI1728353.1 RNA recognition motif domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0005575_0.859|GO:0110165_0.858|GO:0005622_0.741|GO:0008150_0.688|GO:0003674_0.682|GO:0005488_0.648|GO:0016020_0.625|GO:0043226_0.572|GO:0043229_0.566|GO:0097159_0.564|GO:0003676_0.550|GO:0009987_0.537|GO:0043227_0.515
|
IPR000504+96-174_97-170_98-167+|IPR012677+69-227+|IPR035979+96-196+|IPR051738+52-273+
|
SM00360+97-170+
|
PF00076+98-167+RNA_recognition_motif
|
— |
PTHR15683+52-273+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-96;157-299;443-443
|
2.000
|
97-156;300-442
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.861
|
45536.700
|
11.243
|
37.000
|
18.284
|
6.321
|
50.790
|
49.210
|
13.770
|
4.515
|
65.914
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
515.362
|
1364.795
|
722.445
|
550.152
|
582.706
|
557.867
|
475.291
|
412.855
|
624.131
|
36.819
|
288.524
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.147
|
-1.448
|
-0.285
|
— | — |
-0.223
|
-0.535
|
0.342
|
3.964
|
— |
4.176
|
— | — |
No JSON data available for plots.