Hg_chrom9_TN10mRNA_17888
Organism: Heterodera glycines Gene Locus: chr9:6634933-6637409 Feature type: polypeptideProtein Sequence
Length: 602
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.753 | 1.12 | 1.268 | 0.286 | 1.163 | 0.894 | 0.376 | 0.748 | 1.513 | 1.369 | 1.233 | 1.661 | 1.523 | 0.767 | 1.288 | 1.044 | 0.953 | 0.881 | 1.15 | 0.489 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16911
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.507
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
KRPR,KKFIRKFRKSK,RKMSDDESLESVLGRIKKF
|
— | — | — | — | — | — |
0.000
|
— | — |
0.833
|
0.240
|
0.043
|
0.234
|
0.158
|
0.139
|
0.092
|
0.038
|
0.052
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000368
|
7.000
|
1.000
|
Hsc_gene_24056.t2
|
Hsc_gene_24056.t1;Hsc_gene_24056.t2
|
— |
Q80WQ9.1 Zinc finger BED domain-containing protein 4 [Mus musculus]
|
KAH7708893.1 zinc finger BED domain-containing protein 4-like [Aphelenchus avenae]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046983
|
GO:0008150_0.771|GO:0005575_0.737|GO:0110165_0.735|GO:0003674_0.706|GO:0005622_0.705|GO:0005488_0.622|GO:0005737_0.590|GO:0043226_0.590|GO:0043229_0.581|GO:0016020_0.567|GO:0043227_0.505
|
IPR008906+513-594+|IPR012337+126-596+|IPR052035+36-601+
|
— |
PF05699+513-594+hAT_family_C-terminal_dimerisation_region
|
— |
PTHR46481+36-601+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-602
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.627
|
69203.620
|
8.308
|
7.500
|
29.900
|
10.133
|
51.329
|
48.671
|
15.947
|
13.953
|
45.183
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
206.741
|
15.476
|
34.681
|
21.080
|
23.218
|
15.758
|
11.141
|
27.267
|
521.902
|
457.331
|
485.004
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.934
|
— |
-0.610
|
— | — | — | — |
-1.150
|
— |
-4.471
|
— | — | — |
No JSON data available for plots.