Hg_chrom9_TN10mRNA_17892
Organism: Heterodera glycines Gene Locus: chr9:6802198-6804070 Feature type: polypeptideProtein Sequence
Length: 225
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.827 | 0.827 | 0.808 | 0.46 | 0.963 | 0.798 | 1.058 | 2.0 | 0.395 | 1.562 | 0.875 | 1.046 | 1.358 | 1.026 | 0.998 | 0.825 | 0.729 | 1.347 | 2.051 | 1.176 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16915
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.649
|
0.317
|
0.005
|
0.525
|
0.267
|
0.080
|
0.094
|
0.015
|
0.057
|
0.120
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002555
|
3.000
|
1.000
|
Hsc_gene_18605.t1
|
Hsc_gene_18605.t1
|
— |
Q96A44.1 SPRY domain-containing SOCS box protein 4 [Homo sapiens]
|
KAI1707158.1 SPRY domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.927|GO:0005575_0.817|GO:0110165_0.812|GO:0008152_0.777|GO:0044238_0.748|GO:0019538_0.718|GO:0043170_0.718|GO:0009056_0.698|GO:0005622_0.690|GO:0009057_0.683|GO:0030163_0.676|GO:0005737_0.671|GO:0003674_0.569|GO:0006508_0.523|GO:0006511_0.514|GO:0019941_0.514|GO:0043632_0.514|GO:0051603_0.514|GO:0009987_0.507
|
IPR001870+1-198+|IPR003877+66-197_69-188+|IPR013320+12-198+|IPR043136+30-191+|IPR050672+7-198+
|
SM00449+66-197+
|
PF00622+69-188+SPRY_domain
|
G3DSA:2.60.120.920:FF:000035+29-192+SplA/ryanodine_receptor_domain_and_SOCS_box_containing_1
|
PTHR12245+7-198+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-225
|
2v24_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.763
|
25278.940
|
7.883
|
5.500
|
24.889
|
15.556
|
41.778
|
58.222
|
14.667
|
10.222
|
49.778
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
136.829
|
76.609
|
46.315
|
39.529
|
45.508
|
61.455
|
122.200
|
46.307
|
574.007
|
3.899
|
248.231
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.952
|
-1.091
|
— | — |
0.446
|
1.003
|
-0.514
|
1.544
|
6.624
|
-3.690
|
— | — | — |
No JSON data available for plots.