Hg_chrom9_TN10mRNA_17895
Organism: Heterodera glycines Gene Locus: chr9:6831069-6833830 Feature type: polypeptideProtein Sequence
Length: 184
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.632 | 1.517 | 1.581 | 0.375 | 0.634 | 1.533 | 0.582 | 1.359 | 1.208 | 1.175 | 0.412 | 3.197 | 2.264 | 0.627 | 1.442 | 0.854 | 1.158 | 0.412 | 1.672 | 0.639 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16917
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.861
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.248
|
0.389
|
0.042
|
0.743
|
0.045
|
0.198
|
0.160
|
0.085
|
0.291
|
0.263
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001048
|
3.000
|
2.000
|
Hsc_gene_8765.t1;Hsc_gene_8765.t2
|
Hsc_gene_8765.t1;Hsc_gene_8765.t2
|
— |
P12815.2 Programmed cell death protein 6 [Mus musculus]
|
KAH7726829.1 Protein M04F3.4 b [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0005575_0.795|GO:0110165_0.795|GO:0008150_0.787|GO:0003674_0.774|GO:0005622_0.667|GO:0005737_0.632|GO:0016020_0.625|GO:0009987_0.585|GO:0005488_0.541
|
IPR002048+5-40_9-37_10-70_46-74_72-107_76-104_76-137_108-143_112-140_142-172+|IPR011992+7-170+|IPR018247+18-30_85-97+|IPR051426+5-173+
|
SM00054+9-37_46-74_76-104_112-140_142-172+
|
PF13499+10-70_76-137+EF-hand_domain_pair
|
G3DSA:1.10.238.10:FF:000003+10-140+Calmodulin_A
|
PTHR46212+5-173+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-184
|
5jjg_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.551
|
21539.340
|
5.585
|
-2.500
|
25.000
|
15.217
|
50.543
|
49.457
|
12.500
|
12.500
|
45.652
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
tan
|
1502.967
|
1280.679
|
877.104
|
1248.458
|
1709.733
|
2307.455
|
2036.079
|
1826.560
|
2104.643
|
764.725
|
1338.975
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.775
|
-0.174
|
0.618
|
0.422
|
0.447
|
-0.170
|
-0.440
|
0.299
|
— | — | — | — | — |
No JSON data available for plots.