Hg_chrom9_TN10mRNA_17897
Organism: Heterodera glycines Gene Locus: chr9:6836884-6846974 Feature type: polypeptideProtein Sequence
Length: 1,007
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.143 | 0.97 | 0.831 | 1.062 | 0.844 | 1.553 | 0.816 | 2.284 | 0.817 | 1.127 | 0.497 | 1.344 | 0.993 | 0.993 | 1.702 | 1.007 | 0.912 | 0.918 | 1.222 | 0.263 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16919
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKQHTLIIFDKGKKM,KKMSIAGMTFAGGKDRRC
|
12-35
|
0.984
|
48-77
|
0.871
|
— | — |
0.001
|
— | — |
0.463
|
0.133
|
0.041
|
0.363
|
0.081
|
0.065
|
0.046
|
0.006
|
0.255
|
0.098
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001475
|
2.000
|
3.000
|
Hsc_gene_8768.t1;Hsc_gene_8863.t1;Hsc_gene_8870.t1
|
— | — | — |
KAH7726803.1 Protein Y18H1A.3 [Aphelenchus avenae]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
242-304;884-1007
|
2.000
|
1-241;305-883
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.831
|
111731.650
|
8.686
|
43.000
|
25.819
|
10.626
|
48.659
|
51.341
|
16.187
|
9.633
|
52.334
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
522.665
|
81.499
|
104.728
|
145.945
|
235.463
|
144.373
|
325.195
|
107.731
|
948.917
|
1145.620
|
1061.319
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.703
|
0.587
|
0.659
|
-0.693
|
1.182
|
-0.531
|
1.738
|
— | — | — | — | — |
No JSON data available for plots.