Hg_chrom9_TN10mRNA_17898
Organism: Heterodera glycines Gene Locus: chr9:6863381-6863860 Feature type: polypeptideProtein Sequence
Length: 114
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.02 | 1.224 | 0.478 | 0.0 | 1.023 | 0.9 | 1.358 | 1.316 | 0.585 | 1.66 | 1.063 | 0.516 | 0.731 | 0.675 | 2.148 | 0.752 | 0.431 | 1.329 | 0.675 | 0.774 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16920
|
— | — |
1.444
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.986
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
GKGGKAKTEDGKNKSR
|
19-39
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.593
|
0.180
|
0.086
|
0.429
|
0.121
|
0.041
|
0.126
|
0.010
|
0.109
|
0.142
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000315
|
6.000
|
3.000
|
Hsc_gene_14191.t1;Hsc_gene_8791.t1;Hsc_gene_8802.t1
|
Hsc_gene_14191.t1;Hsc_gene_8791.t1;Hsc_gene_8802.t1
|
— |
P09588.2 Histone H2A [Caenorhabditis elegans]
|
KAI3409970.1 imidazoleglycerol-phosphate dehydratase [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000786|GO:0003677|GO:0030527|GO:0046982
|
GO:0005575_0.826|GO:0110165_0.825|GO:0016020_0.693|GO:0043226_0.687|GO:0005622_0.655|GO:0043229_0.624|GO:0043227_0.590|GO:0008150_0.533|GO:0043231_0.517
|
IPR002119+5-114_7-98_13-99_16-38_45-60_60-73_74-88+|IPR007125+6-91+|IPR009072+3-106_5-98+|IPR032458+24-30+
|
SM00414+5-114+
|
PF00125+6-91+Core_histone_H2A/H2B/H3/H4
|
G3DSA:1.10.20.10:FF:000103+2-106+Histone_H2A_type_1
|
PTHR23430+13-99+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-30
|
1.000
|
31-114
|
6k1j_G
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.624
|
12605.510
|
11.187
|
11.500
|
28.947
|
8.772
|
45.614
|
54.386
|
20.175
|
8.772
|
48.246
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
red
|
17.353
|
0.926
|
3.309
|
5.110
|
5.174
|
8.012
|
60.116
|
18.120
|
0.927
|
37.436
|
21.790
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.334
|
— | — | — |
2.917
|
1.069
|
1.875
|
— | — | — | — | — |
No JSON data available for plots.